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52-0318-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3422885 [Map]; Strand: c
      • AT1G10410.1 - [+] show detail - Protein of unknown function (DUF1336)
        Distance: -3246; Region: intergenic
      • AT1G10417.1 - [+] show detail - unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Arch...
        Distance: 1301; Region: intergenic
    Flanking Genome Sequence: 52-0318-1 - 5-prime edge 
    CTTTTATAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCGGCATTA GCAACAAAAA CAACAAAGGT TATTGGGAGT ATCAAAGATG 
    GCACAGTGGT CCACCATTCG ATTTCTTAGT TGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3422956 [Map]; Strand: c
      • AT1G10410.1 - [+] show detail - Protein of unknown function (DUF1336)
        Distance: -3317; Region: intergenic
      • AT1G10417.1 - [+] show detail - unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Arch...
        Distance: 1230; Region: intergenic
    Flanking Genome Sequence: 52-0318-1 - 3-prime edge 
    CCCAAAATAC CTAACTTTAT TTCAAACAAA CCCTACAATC AATAGACCAA 
    CCAAAAAAAG TAGATTAAAA ATAGATGAAA ATAATTCACA CCAAAAAAGA 
    TGAAACGTAA TTCAA

AT1G10410.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1336)
Computational Description
Protein of unknown function (DUF1336); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT1G59650.1); Has 292 Blast hits to 292 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 234; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10417.1

Model type
Protein coding
Curator Summary
Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.
Computational Description
unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433; Bacteria - 3134; Metazoa - 12646; Fungi - 2033; Plants - 1219; Viruses - 58; Other Eukaryotes - 6483 (source: NCBI BLink).
Link
InterPro Scan - TAIR