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52-0330-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11703303 [Map]; Strand: w
      • AT5G31770.1 - [+] show detail - transposable element gene
        Distance: 1541; Region: intergenic
      • AT5G31787.1 - [+] show detail - transposable element gene
        Distance: -9810; Region: intergenic
    2. Chromosome: 5; Position: 11705417 [Map]; Strand: w
      • AT5G31770.1 - [+] show detail - transposable element gene
        Distance: 3655; Region: intergenic
      • AT5G31787.1 - [+] show detail - transposable element gene
        Distance: -7696; Region: intergenic
    3. Chromosome: 5; Position: 11723779 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -2215; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -15498; Region: intergenic
    4. Chromosome: 5; Position: 11730473 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -8909; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -8804; Region: intergenic
    5. Chromosome: 4; Position: 3952639 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2037; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4543; Region: intergenic
    6. Chromosome: 4; Position: 3952817 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2215; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4365; Region: intergenic
    7. Chromosome: 4; Position: 3952995 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2393; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4187; Region: intergenic
    8. Chromosome: 4; Position: 3953528 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2926; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3654; Region: intergenic
    9. Chromosome: 4; Position: 3954774 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -4172; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 2408; Region: intergenic
    10. Chromosome: 3; Position: 13587786 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 3812; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -14014; Region: intergenic
    11. Chromosome: 3; Position: 13589321 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 5347; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -12479; Region: intergenic
    12. Chromosome: 3; Position: 13589499 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 5525; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -12301; Region: intergenic
    13. Chromosome: 3; Position: 13590800 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6826; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11000; Region: intergenic
    14. Chromosome: 3; Position: 13591512 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7538; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10288; Region: intergenic
    15. Chromosome: 3; Position: 13592224 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8250; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9576; Region: intergenic
    16. Chromosome: 2; Position: 3606703 [Map]; Strand: w
      • AT2G07880.1 - [+] show detail - transposable element gene
        Distance: 1654; Region: intergenic
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -8283; Region: intergenic
    17. Chromosome: 2; Position: 3607771 [Map]; Strand: w
      • AT2G07880.1 - [+] show detail - transposable element gene
        Distance: 2722; Region: intergenic
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -7215; Region: intergenic
    18. Chromosome: 2; Position: 3615008 [Map]; Strand: c
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    19. Chromosome: 2; Position: 3616600 [Map]; Strand: c
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon10 (CDS)
    20. Chromosome: 2; Position: 3618080 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    21. Chromosome: 2; Position: 3618969 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon5 (CDS)
    22. Chromosome: 2; Position: 3620923 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon15 (CDS)
    23. Chromosome: 2; Position: 3623413 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon29 (CDS)
    24. Chromosome: 2; Position: 3625895 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon43 (CDS)
    25. Chromosome: 2; Position: 3626251 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon45 (CDS)
    26. Chromosome: 2; Position: 3627352 [Map]; Strand: w
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 892; Region: intergenic
      • AT2G09187.1 - [+] show detail - transposable element gene
        Distance: 12251; Region: intergenic
    27. Chromosome: 2; Position: 3718358 [Map]; Strand: w
      • AT2G09850.1 - [+] show detail - transposable element gene
        Distance: 7394; Region: intergenic
      • AT2G09860.1 - [+] show detail - transposable element gene
        Distance: 4091; Region: intergenic
    28. Chromosome: 1; Position: 15083212 [Map]; Strand: c
      • AT1G40104.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 52-0330-1 - 5-prime edge 
    NTCATACACA TGACATCAAG TCATATTCGA CTCCAAAACA CTAACCAACC 
    TTCTTCTTGC ATNTCAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3606231 [Map]; Strand: w
      • AT2G07880.1 - [+] show detail - transposable element gene
        Distance: 1182; Region: intergenic
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -8755; Region: intergenic
    2. Chromosome: 2; Position: 3606587 [Map]; Strand: w
      • AT2G07880.1 - [+] show detail - transposable element gene
        Distance: 1538; Region: intergenic
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -8399; Region: intergenic
    3. Chromosome: 2; Position: 3607299 [Map]; Strand: w
      • AT2G07880.1 - [+] show detail - transposable element gene
        Distance: 2250; Region: intergenic
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -7687; Region: intergenic
    Flanking Genome Sequence: 52-0330-1 - 3-prime edge 
    TGTATGATTG AGTGTAAGAA CTTAAATCGC AACCCGATCT TAAAAGCCTA 
    AGTAGTGTTT CCTTGTTAGA AGTAACAACT CCAAAGACTC ATACGGACTT 
    TGGCTACACC ATGAAAGCTA TGAGAAGCT

AT1G40104.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 88 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 17; Metazoa - 9; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G07880.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11090.1)
Link
InterPro Scan - TAIR

AT2G07981.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 174 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 51; Fungi - 9; Plants - 37; Viruses - 3; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G09187.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G09850.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 4.4e-23 P-value blast match to aF19N02 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT2G09860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 6.1e-47 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G31770.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.7e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31787.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1)
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR