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52-0346-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185089 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -575; Region: promoter
    Flanking Genome Sequence: 52-0346-1 - 5-prime edge 
    AAGACAGCCC TCCGACGAAA GAAGCAGGAC AATGGAACTT TTCCATTGAC 
    TTTTTGTCGA CCCCAAATTT TGACCTTTAA GTACTTTTTC GGGCATTTTC 
    GTGATTTGGG CTATATTACN GGACCCAAAA TTACTTGCTC AAGCATTGTT 
    TTCGAATTTT TTCATGCATC AAAGCTCGTT AAGACTAGAT GGGGTATCCC 
    TACATAGCGG GTGGGACCCA CGGTGAATGG TTCATCAAGT CTTCAAAAAA 
    GAATATATAC GATTGCATTG CATATACTAA CGGATGCGAT CATACCAGCA 
    CTAATGCACC GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15592246 [Map]; Strand: w
      • AT2G37110.1 - [+] show detail - PLAC8 family protein
        Distance: -306; Region: promoter
    Flanking Genome Sequence: 52-0346-1 - 3-prime edge 
    ACTATATCAA AGACTTTTTT TTGTTTAGTG TATAAGTGTA CGAACGAAAT 
    TGTTTGTTTA GTTACATTGT CATAGATAGG ACAATTGAAA AATATTACAT 
    GGTCAGGGAA CCACAAGATT CTCTACGATA AAGAAAGCTT TTAAAGCTCT 
    AAATTTCAGC GAAACTTCCC CAAGTNANTC CNNNNAAGAA TATAGTAATC 
    GTTTCAATGT AAATTTCTCG AAAAAATACA AAAGAAAGAG AAAAAAAATG 
    TTAACGCATC ACGTNAATCC CAACCTTGGG TTCTGTCGAT AACCCATCTC 
    GGGAACGAGT CTCGCTGGCT CCGAGTTACA GCGCGTGAGG ATCANACACT 
    GTCGTGGTGA TCCCAAAACG CTTCGTTTTG GTTCTTCACT CGCTGCTGAT 
    TCTCTTCTTG

AT2G37110.1

Model type
Protein coding
Short Description
PLAC8 family protein
Computational Description
PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT2G40935.1); Has 380 Blast hits to 379 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 19; Plants - 350; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR