1. Home
  2. Mutant Lines
  3. 52-0347-1

52-0347-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3867710 [Map]; Strand: w
      • AT3G12130.1 - [+] show detail - KH domain-containing protein / zinc finger (CCCH type) family protein
        Distance: -1114; Region: intergenic
      • AT3G12140.1 - [+] show detail - Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
        Distance: 878; Region: intergenic
    Flanking Genome Sequence: 52-0347-1 - 5-prime edge 
    NTNCTCAACT ACGNTNAGGA GGGAAAANNN TGGNNAATAT TNTCATNGTC 
    AGCTACGCTA GTTTCCTTTT TTTTTTAAAA AAAAANCCTT GTAATGGTTA 
    TCAAATAAAA AATAATNCCT AATGAATTTA ATTTTATTAA AANAAATNCC 
    ATTATCCTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3867584 [Map]; Strand: w
      • AT3G12130.1 - [+] show detail - KH domain-containing protein / zinc finger (CCCH type) family protein
        Distance: -988; Region: promoter
    Flanking Genome Sequence: 52-0347-1 - 3-prime edge 
    AATGGCCTAA TCCCTCTAAG TAGTTATATT TTGCCTATTC CCTTTCTATG 
    NTCNATCCCT AAAGAACAAA CATGTAATGC ATTCGTTTGT TCTCCCAAAG 
    CCTAAGCAAA GCTTCTNTGG T

AT3G12130.1

Model type
Protein coding
Short Description
KH domain-containing protein / zinc finger (CCCH type) family protein
Computational Description
KH domain-containing protein / zinc finger (CCCH type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein / zinc finger (CCCH type) family protein (TAIR:AT5G06770.1); Has 1306 Blast hits to 1045 proteins in 139 species: Archae - 0; Bacteria - 4; Metazoa - 726; Fungi - 40; Plants - 423; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12140.1

Model type
Protein coding
Short Description
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Computational Description
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (TAIR:AT5G06780.1); Has 265 Blast hits to 250 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR