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52-0354-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6680927 [Map]; Strand: w
      • AT5G19760.1 - [+] show detail - Mitochondrial substrate carrier family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-0354-1 - 5-prime edge 
    GATTTATCCA TAACCATAAG GCAATAAAAA TCTATTCATC TGGATGGGCT 
    CAAGACGAAA GACGAATGAC TAACTTACTT GAATGATCCA AGACGGGCTG 
    TCGTGTAAGT TGCTTGCCTC AGCAACCCAG CAGATAATCC CTATTAAAAA 
    AAATTAACAT CAAATAAGCT CAGGAGACAT CTTCAATGGG GTATAACTAA 
    TGTTGTTGTT GGAAAGACTG TTAGATAAGG AAATTAATTC TTTGAATAGC 
    TGAGACTCAG ATCCGGAAAT GCAGAAATCA TATACATTAC AAATCAACAA 
    AAGTCATGAA CATATCTATA GAAAACATAC TACACAAAAC GTACATCTTC 
    AAGATAAGTA ATGCATCCAG AAATGCAATT TATACCTTGT AGAAGGCACC 
    AACGCCCTCA TTCTTAAGCA TGTTGGTGGT TATACTTGCT GCAGATCCCT 
    GACCAAGTTG AATCCTCACC TTCACCAACC AGAAACAAAA CAAAGTATTA 
    GTTAATTACA TTCACATCAT TTAAAAATCC TATGAACACA GGCGAAGAAT 
    CACACATTGT GATGTACCTA AGAACGTTAT TCTAATCAAA ATCCAGATCT 
    GAACTAGAAC ATTTCATCTA AACATGTATC AATAGCAACA ATTCACACTC 
    AAACGAGTCT GACTATGTTC CGAGCAATGA AATTTGATTA TAATAAGCCA 
    AAACAAAAAC TCAGATCTGA GAGATA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6673606 [Map]; Strand: w
      • AT5G19740.1 - [+] show detail - Peptidase M28 family protein
        Distance: -327; Region: promoter
    Flanking Genome Sequence: 52-0354-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    GGGAGTGGAA AATACAAAAA TGACCACTGA TAAATCATGT CATTTTAAAA 
    CACAACCCCC AACCCTAACT TATTATTACA TAAAAGGTAA AATCCAGGTT 
    AGTTTGTCTG AACAAGACTT GTATCGTTTT GAAACTCATA TGAAAATAAT 
    TAAAATAAAT ACACCAATCT GTTTCAAAAT ACATTGGACT ACACCGGAAT 
    T

AT5G19740.1

Model type
Protein coding
Short Description
Peptidase M28 family protein
Computational Description
Peptidase M28 family protein; FUNCTIONS IN: dipeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Transferrin receptor-like, dimerisation (InterPro:IPR007365), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Peptidase M28 family protein (TAIR:AT3G54720.1); Has 3567 Blast hits to 3525 proteins in 555 species: Archae - 24; Bacteria - 1302; Metazoa - 657; Fungi - 527; Plants - 315; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G19760.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Computational Description
Mitochondrial substrate carrier family protein; FUNCTIONS IN: oxidative phosphorylation uncoupler activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: dicarboxylate carrier 2 (TAIR:AT4G24570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR