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52-0369-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3254564 [Map]; Strand: w
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0369-1 - 5-prime edge 
    GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC CAAGATCCTG TTTATGTAGA CGGGTCACTT 
    CATTGGTTCA CTGCCTTGTC ACACGAGGGC GAAACCATGG TTTTGTCTTT 
    GGATCTTCAC TCCGAAACGT TCCAAGTCAT CTCTAAAGCT CCCTTTCTCA 
    ATGTCTCTGA TGAATATTAT ATCGTCATGT GCAACCTCGG TGATCGTTTG 
    TGCGTATCCG AGCAAAAGTG GCCCAACCAA GTCATATGGT CGTTGGATGA 
    TTCAGACCAC AAGACATGGA AGCAAATATA TTCCATAGAC CTCATTATCA 
    CCTCTTCTTT GTTCTTTAGT GCCATATTCG CATTCACCCC ACTAGCAGTT 
    TTGGACAAGG ACAAGTTATT GTTTTATGAT AGTACACACG GGGATGCATT 
    CCTAACACAT GATCCAGATA CCAAATCTTA TGATTTGCCT TACACATCTA 
    ATCGCTGTGC AACTGTTGTT TGTTATTTCC CGAGTTTAAT TTCTATTTTG 
    TAGACTTGAA TGATTGGTTA TTTGTCCAAG CATTCTTTTT TGGTCGTTAT 
    TTGTCCAAGC ATTCTAGTTT CTGATTAGTT TACTCACTGG GTTATGAATT 
    ACTATGTTTT ATCAATATCA ACATCACATT ACAAATTTTC ATAAATTTAA 
    TGTTTTGATT ATACCATACA TCAAAAGTAC TAATGACGAG AAGAAAAAAC 
    ATTATTCTTT TTTTTACTCT GTAATCATCG ATTCTCCAAC CGAAAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3254550 [Map]; Strand: w
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0369-1 - 3-prime edge 
    AAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTCT TCACTGAAGA 
    ATCAGATGAG GGGACGCGGG GAAAACGTAC CTCCAAGCGT TGGTGGCAAA 
    ATCGAAAACT TCACAAGTAG TAGGCTTGTC ATTTAGGTCT AACTCAGCGG 
    AATTATATAA CCAAACTGGC TTGTAAGTGC CACTGATTTT GTCTTTGCCA 
    AATCCAGGAG TAGGGCATGC GACTTTAAAG CACTCGTGTC TCTCACCCTT 
    GTCGGCAGCG ACTAGTTGAT AGTTGCATTT AGGGAAAGTT CGATGCCATC 
    GAGTGGTGGG ATTGACGACA ATACTCGGCA GTTCATAGAA ACTGAAGAGG 
    CATATCAGAC CATCACAGCT AGTATTGCAA ACGAAGTACA ACTTGTCCTC 
    CCAAGGAGTA GGGATCTGAA CAGAAGCTGC AGATGACTCC ACCAAAAAAG 
    TTCTCAGAGC TTCAAAGCTG CTTATGCTTG GATCTTGTTG ACGAGCACAA 
    GGATCATATA AGGACACCAA AAGCACATGT GGATCTCCTG ATGATTGGCT 
    AAGATGGTGG ATCAACTGTC TTTCTTGGAA ACTAGGGGAT TGGATTGTAG 
    ACATCCATTG CTTCGATACA GACTTGAACT TGAGGAGGGT TTTCACATCA 
    AGCCTCACCA TTATATGATA CTCTATCACA TCGTGTGGTA ACAATTCTTC 
    CATACTTGTC TCTGAATCTC TCAATGTTAT AGATTGAAGA CAAGAGCCTN 
    CGTATGCTTT ATTTATNAAC CAAACCTATC ACCCTAGTCA GAG

AT5G10340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR