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52-0370-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25312642 [Map]; Strand: w
      • AT1G67540.1 - [+] show detail - unknown protein; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; B...
        Distance: -160; Region: promoter
      • AT1G67540.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -160; Region: promoter
      • AT1G67550.1 - [+] show detail - urease
        Distance: -98; Region: promoter
    Flanking Genome Sequence: 52-0370-1 - 5-prime edge 
    GTTGCCAAAA GTGGGTTTTT TGAAAACATT TTTAAAACCA AACGTTGGGA 
    ATCATTTTTA AAATAAAATA AAAAAGGAAA CCGAATCTAT GACGCATGCA 
    TGAGGTAAGC CATTAGATAG GTTGTACCTG TGCGAGTCTG CGAATCACCG 
    ATGGTCAACG TCTCTTCTCC TTCAACTTCA AATTTAGTCT CTTACCAGTA 
    CGACTTCTCG GTAACGGAAT CGTTGCTCTG TTTGCCGGAG ACGTGGGTAA 
    GATTGGATTG GGAGGTGGAG AAATGAAGTT GTTGCCGCGA GAGATCGAGA 
    AGTTAGAGCT ACATCAAGCT GGTTTCCTTG CACAGAAACG TCTTGCTCGT 
    GGTATTAGAC TCAATTACAC TGAAGCTGTA GCACTCATTG CTACTCAGGT 
    ACTTCACTAT TCTTCAATTT CATTTACTCT TTTTATGGTC TGCTATTTCT 
    TAAGTCGAAG TTATGGTTCT CATGGTTGTG TAGATTCTTG AGTTTATTCG 
    TGATGGTGAG AAAAGCGTGG CTGAGCTAAT GGATATTGGA AGACAACTAT 
    TAGGAAGGTG ATAATGATAA ATTCTGTAGT TGATTCACTT TTGGTTTGTT 
    TTGATAACTT TAGTAATATT GCATCTTCTT GTTTTGTAAA TAGGAGACAG 
    GTTCTTCCTG CTGNTGTACA TCTTCTGTAT ACNGNTCAGG TAGTGGNTCA 
    TTGATTCTTT TTAATGTTCC TTGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25312526 [Map]; Strand: w
      • AT1G67540.1 - [+] show detail - unknown protein; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; B...
        Distance: -44; Region: promoter
      • AT1G67540.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -44; Region: promoter
      • AT1G67550.1 - [+] show detail - urease
        Distance: -214; Region: promoter
    Flanking Genome Sequence: 52-0370-1 - 3-prime edge 
    TTGGCAACCC AGTTTCGAAT CTTCTCGAGT GGACTTAAAA AAAGAATAGC 
    GTAACCGCTC GTTCTAAAAA ATGCTCAGCT GAAATCAAGA CTAACCGCTC 
    GCTTACCCTT GACTAACGTA TAAAATCCTG AAACCGAACT AATTTTCTCA 
    AAGTTTCTCG ATCATTTTCC GGGAAAATTT ACAGACGAGA AAATAAAACA 
    TTTGGAATCT GCTACATTCC TCATAAATGG TATGCAATTC TCTTTGTTCT 
    TACTCTTTGA TAACCTCAAA TAATCTGGAC ATGTTTGGTT ATTTTTTGTG 
    ATTTTGGATT TTGACAGGAG CAACCGGCGA GAAGGAGGCC GCGACGTCGT 
    CCTCTTGAGA CTTGTGGTGG TGTAATACTC TCCATGGCTC GTGTTGTTTA 
    CACAAGAAGC CAGACTCTGA TGAAGAAGAA AAAGAATCTA TCCTCTTGGC 
    TATTGAGGAA ACTCTTTGAA TT

AT1G67540.1

Model type
Protein coding
Computational Description
unknown protein; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67540.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67550.1

Model type
Protein coding
Short Description
urease
Curator Summary
Encodes a nickel-containing urea hydrolase involved in nitrogen recycling. It requires three urease accessory proteins for its activation.
Computational Description
urease (URE); CONTAINS InterPro DOMAIN/s: Urease, alpha subunit (InterPro:IPR005848), Urease, alpha subunit, conserved site (InterPro:IPR017950), Amidohydrolase 1 (InterPro:IPR006680), Urease, alpha/gamma subunit (InterPro:IPR002026), Urease, alpha subunit, core (InterPro:IPR017952), Metal-dependent hydrolase, composite domain (InterPro:IPR011059), Urease, beta subunit (InterPro:IPR002019), Urease (InterPro:IPR008221), Urease, alpha subunit, C-terminal (InterPro:IPR017951), Urease alpha-subunit, N-terminal (InterPro:IPR011612); Has 10097 Blast hits to 10094 proteins in 1139 species: Archae - 93; Bacteria - 7117; Metazoa - 16; Fungi - 228; Plants - 47; Viruses - 0; Other Eukaryotes - 2596 (source: NCBI BLink).
Link
InterPro Scan - TAIR