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52-0381-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185294 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -780; Region: promoter
    2. Chromosome: 5; Position: 11185796 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1282; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4747; Region: intergenic
    3. Chromosome: 5; Position: 11186298 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1784; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4245; Region: intergenic
    Flanking Genome Sequence: 52-0381-1 - 5-prime edge 
    GCGGGTGGGA CCCACGGCGA ATGGTTCATC AAGTCTTCAA AAAAGAATAT 
    ATACGATTGC ATTGCATATA CTAACGGATG CGATCATACC AGCACTAATG 
    CACCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185178 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -664; Region: promoter
    Flanking Genome Sequence: 52-0381-1 - 3-prime edge 
    CCACCCGCTA TGTAGGGATA CCCCATCTAG TCTTAACGGG CTTTGATGCA 
    TGAAAAAATT CGAAAACAAT GCTTGAACAA GTAATTTTGG GTCCGTAATA 
    TAGCCCAAAT CACGAAAATG CCCGAAAAAG TACTTAAAGG TCAAAATTTG 
    GGGTCGACAA AAAGTCAATG GAAAAGTTCC ATTGTCCTGC TTCTTTCGTC 
    GGAGGGCTGT CTTTGGGCTT TCCGAAAAGG TATCACATGC CAAGTTTGGC 
    CTCACGGTCT AAAAGTTATG GAGTCATAAA GTTTTAACCA AAAAAGAAAA 
    GGTTAAACAT AAAAGAGGGA TGCAACACGA GGACTTCCCG GGAGGTCACC 
    CATCCTAGTA CTACTCTCGC CCAAGCACGC TTAACTGCCG AGTTCTGATG 
    GGATC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR