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52-0392-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 808107 [Map]; Strand: c
      • AT1G03290.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT1G03290.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0392-1 - 5-prime edge 
    TNNNAAAAAA ATTNAAAAAC GGGNNAAAAC TAACAAATCG GTTATACGAT 
    AACGGTCGGT ACGGGATTTT CCCATCCTAC TTTCTGAGCA CAAGCATGGT 
    GGATACTTTC ACAATTTCAC TGCTAAAGTT GGAGTAATCA AATAAGAGAT 
    CAGTTTTTTA CCTGAGGAAA TATTTCCGTT AGAGATCGAT AAACAGAACC 
    GAAACCCATC AGTGAAAGTT AATAAACTCT GCAGAAAAAA AAANCAANCA 
    AAATNTTATT TTTGATGCAA ANAAAACTAN CNTCCAAAAA ATTNTTTGGA 
    AATAATTNAT NATNTAANCT AGTAAAGCCC CNTNNCANNC CTNTTGNNAA 
    AACCCTANTG TTAAAAACCC TGAAAAAAAA ATCCGNGNTT TGAAAATNGA 
    TGAAANANAC CCNCTNTNNT NCAAGNGCAA AAAANAAAAN ANCAANGATC 
    CNAAAAGTCC AAACTCAGTT TCNCCTAATC AAGCTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 819722 [Map]; Strand: w
      • AT1G03330.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -159; Region: promoter
      • AT1G03340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0392-1 - 3-prime edge 
    CTCGTTGCTT CTTAGCTCTT GAAGGAGACT AAACCTAAGT GTTGAATAGC 
    TATGAGAAGC CATTGAGAAA AAACTGACTT CTTATTTTTT TTTCTCTTCT 
    TCGTCACAAA ACCATGGAAA CAAAACGAAA AAGCT

AT1G03290.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2); Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257; Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants - 675; Viruses - 54; Other Eukaryotes - 3602 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03290.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2).
Link
InterPro Scan - TAIR

AT1G03330.1

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 762 Blast hits to 762 proteins in 209 species: Archae - 2; Bacteria - 0; Metazoa - 303; Fungi - 225; Plants - 97; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03340.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02920.1); Has 44 Blast hits to 41 proteins in 13 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR