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Mutant Lines
52-0393-1

52-0393-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 3511586 [Map]; Strand: w
- AT3G11200.1 - [+] show detail - alfin-like 2
  Distance: -959; Region: promoter
- AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
  Distance: 0; Region: exon5 (CDS)

TACTTCTAGG CCGAGTTCTT GGCACAGCTC TACACAAGCA TCTGAATAAG 
TCTTGCAGAG GTCGTTTGTG CGGATTACCT CGCTCAAGTA TGGGCTTGTG 
AGAGAAAAAG AAGCACATCT ATATTAATAA GGCCGGAGAG AATAAGGAGA 
AACAGAGAGA TAGTGAAGAA ATTCAGGGAA GTTACCTTTG GTTCTGGCGA 
ACTTTAGCCT CATCCACTGG AGGAGAACTA AGAAATATGA TTCGGGTGAA 
GTCTGAAAGG CTCTGAAACA GAAAATAGAG GAAGAAATTA GCACTTGAAA 
TGGCTTTTAA ACGTGACTGA CAGGAGATAA ATAATAAATC TAACAATTAT 
AAAGGAAGTA TAAACCTGAA GATGAAGAGC GATCTTCTTC ATGTTATCAA 
CATATTCAGT AAGTGGTACA TGAGGTCCTA GTCCAGACGA GTGAGGCGCC 
ATTGAGTCGT TTCCTCCAAA ATAGACAATG ACCAGAGAAG GTTGTACTGC 
AGCATCCTGC ATCCGTAACA AGTTGCAATT TTTAGGCGAC AAAGTGGAAG 
AAAACAGAAG CT

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 3511470 [Map]; Strand: w
  - AT3G11200.2 - [+] show detail - alfin-like 2
    Distance: -918; Region: promoter
  - AT3G11200.1 - [+] show detail - alfin-like 2
    Distance: -843; Region: promoter
  - AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
    Distance: 0; Region: exon5 (CDS)
Flanking Genome Sequence: 52-0393-1 - 3-prime edge
```
TAGAAGTAGT TGATCTCTTC TCTACTTTTC AGAAAGCAGA TGACTGGAAA 
ACTGTTTGCT TCACGTAAGT ATTTTTTGAG TTCTGAAGAA ATATAGAGAG 
ACCTTTGATA TATATGACTT TCTCAGAGTT TCCAAATGCG ATAACCGGGA 
ATGGAGTATC GACGATGTTC ATTGAAATGT TTTAACGGTA TAGTCTGGTT 
TGTTACAGAG ACGGGATTCA TTTGTCAGCA CAAGGAAGCA AAATAGTAGC 
GGGAGAGATA CTAAGAGTGG TTAAAGAAGC GGAATGGCAT CCATCACTTC 
ACTGGAAATC AATGCCAACA GAATT
```

AT3G11200.1

Model type: Protein coding
Short Description: alfin-like 2
Curator Summary: AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description: alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G11200.2

Model type: Protein coding
Short Description: alfin-like 2
Curator Summary: AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description: alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G11210.1

Model type: Protein coding
Short Description: SGNH hydrolase-type esterase superfamily protein
Computational Description: SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link: InterPro Scan - TAIR