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52-0394-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7227411 [Map]; Strand: c
      • AT2G16670.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0394-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTGAG AATCGATGTG TTTTGCAAAT GTCTGATCGC
    TTCCTTGTCG TGCAGGACCG CACTTCGAGG ATGGTGATGG GAGCTGGTAG
    GCGTGTTGGG GGAACGTTTC ACTTTCGCAG TACNGGAGAT CGCAGCATCA
    GTCACNGGTT AAAGAGGAGA AGAATTATGA GCTGTGGCAT AGTCGGATGG
    GTCACCCAGC TGCGAGAGTT GTTAGTTTGA TACCCGAGAG TTCTATTTCT
    GTTTCTTCTA CACATTTGAA TAAGGCATGT GATGTTTGTC ATCGTGCTAA
    GCAAACAAGA AATTCTTTTC CTTTGAGTAT CAATAAAACT TTGCGAATTT
    TTGAGTTAAT TCACTGTGAT TTGTGGGGGC CTTATCGCAC ACCGTCACAT
    ACCAGTGCTC GCTATTTTCT AACTATAGTT GATGATTACT CAAGAGGGGT
    TTGGTTGTAC TTGTTGAACG ATAAGAGTGA GGCGCCATGT CACTTGAAGA
    ATTTCTTTGC AATGACAGAC AGACAGTTCA ATGTCAAGAT AAAGACGGTG
    AGAAGCGACA ACGGAACAGA ATTTCTGTGT TTGACTAAAT TTTTCCAGGA
    ACAAGGAGTT ATTCATGAGC GATCTTGTGT GGCTACTCCA GAGCGAAATG
    GCAGAGTTGA GAGAAAACAT AGACATTTAC TTAATGTTGC AAGGGCGTTG
    AGGTTTCAAG CCAATCTACC AATTCAGTTT TGGGGAGAGT G
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7227462 [Map]; Strand: c
      • AT2G16670.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0394-1 - 3-prime edge
    ATTCTCATCC ATCAATTGTC CAATTGAGAT TAAATCGGAC TGAAATTCTT 
    CAACATAAAA TACAGATATC ATAACCAAAT TTGACCCAAG TCGAACTGTT
    CCTTCTTTAA CCGAAATTCG TTCCCTACCA TCAGCTAGAA CTATCAAAAT
    TGGGTCCATA TCTCTAACAT TCATCAATAT ATCAAATTTT CCCGTCAAAT
    GATGAGAGGC TCCAGTGTCC ATTATCCAAG AGGGTGAATT AAACTTACCG
    GTTAGCTTTT CAGTTGCAGC ATCTTTCCCG GAGTTGAGAA TGCTTTTGAT
    GGTTCTCCAC TGACTGTCGG TGAGACCATT CACACCATCA CGGTCTTCGT
    CAGTGAGAGC ATAGTTAGCT TGCTCATATG TGTCGTGGTT TGGAACCGTC
    ACACGATTGG CATAGGCAGC TGCACCACGT CCACGCCCTC CGCTCGAATT
    GGTTCCTCCA CGACCTCGAG TTTGCAATGA TCTGCTCCGT GGCCTATCTC
    CCCACCACTC CGGATAGCCA ATGACGGCAT AACAGCTTTC GGATGCATGA
    CCACTGCGAT TACAATGTTT ACACACCATA CTCTTATCTT TTTCATCACC
    TCTTCCTTGA TAAAGCT

AT2G16670.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR