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52-0395-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17711457 [Map]; Strand: c
      • AT4G37700.1 - [+] show detail - unknown protein; Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; ...
        Distance: -584; Region: promoter
    Flanking Genome Sequence: 52-0395-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCATAATAGA TATTCATCAG TGCATGATGA AGTTTAGAGG TAATTATTAG 
    ATATTCATAT TTTTGGACGG TGGATCGTTC ATGTACATAT ATTCAATTTT 
    TTTGCAATTT GATTATTCCA TAAATTTTGA TGTTCACATC TCATGTTTTC 
    CATGTTTTGA AGTCAACTCT TGACTTTACA TTTTCTTAGC ATATATGGTT 
    TAAATTTATG AATACGATGG GTCTAATAAT ATAGGGGTTA CGATCAAATA 
    GGCTCCACAA TTGAGAGTAG CATAACTTTA TTTTGTTATC ATAATCAAAT 
    TCTATCTTTT GTTATGTATG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23168747 [Map]; Strand: c
      • AT5G57180.1 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
      • AT5G57180.3 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
      • AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0395-1 - 3-prime edge 
    CTTCTACGGG CCATTGCTTA GTGACAACGA CGAAGGTTCT GATTTGCTTC 
    TTCCTTATGA ATCAATCGAA GAACCTGATT TTCTGTTTCA TCCAACGATT 
    CAAACGAAAA CAGAGTTTTT CTCAGACCAG AAGGAAGTTA ACTCCGGTGG 
    AGGTTGCTAC GGTGGTGAAA TCGAAAAGTT TGATTACTCC GACGAATT

AT4G37700.1

Model type
Protein coding
Computational Description
unknown protein; Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57180.1

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.2); Has 1391 Blast hits to 1370 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 7; Plants - 1340; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57180.2

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1820 Blast hits to 1799 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 7; Plants - 1718; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57180.3

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 102 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 7; Plants - 54; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR