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52-0397-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5038191 [Map]; Strand: w
      • AT5G15520.1 - [+] show detail - Ribosomal protein S19e family protein
        Distance: -19; Region: promoter
      • AT5G15530.1 - [+] show detail - biotin carboxyl carrier protein 2
        Distance: -560; Region: promoter
    Flanking Genome Sequence: 52-0397-1 - 5-prime edge 
    CACTCCGTTA AGCCAAGAGC TTTCAATTTT CTGTCACAAA GTCTATATAT 
    ATCTGAGCAT TCAATTTTCA ATTAGGTTTT TTTTCGGACA CATTGAACCC 
    GAATCGACCT AGACGGTTTT TTTTCGGACA ATTAGGGTTT TTTCGGACCC 
    ATTATGGGCC CATTAAATCT ATTTAAGCGG CTTATACGCA CCGTTTTTGT 
    TAAAAGTGTA GTTCATTAGC TACTGCCTAC TGAAAGTTAT AAAGATAATG 
    TTTTTGACCA AAAGCCACAG ACAAGTTTAG CTGAGTAAAA AACGCATGGT 
    CTTGTCTTCA ATAAAACCCC ACCTATCTGC ATTTACTGAA GTGACCAACT 
    ATAAAATATG TTTAAGTGTC ACTGGATATT GTTGAGTTTT AAATCTTGCA 
    GACATTATGA CCAAAGATTG GATCAAAAAG ACTGTTGGAT TTGTGAAACA 
    AATGCAGATT ACATGGAGGC AATCTCTGAA AGACTGTTCC GGTGATTAGA 
    CCAGTAACAC ATGTATAGCT GAACACACAT ATCTATATCT ATCTATATTG 
    GTGTATTTTG NGTATATACT AAAAAATAAG ACAGAGAAAC ACCGAGGCAC 
    TATGTTATGA CATGACACGA TTGAACTGAT AGAAGACAAA AGGAGCGGTT 
    TGGTGAAGTT AGTTAAAAGA GTTGGGTTTC TTCGTAAGCA TCGAAATCAG 
    ATTTCTTTAC CAAANAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5038078 [Map]; Strand: w
      • AT5G15520.1 - [+] show detail - Ribosomal protein S19e family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G15530.1 - [+] show detail - biotin carboxyl carrier protein 2
        Distance: -673; Region: promoter
    Flanking Genome Sequence: 52-0397-1 - 3-prime edge 
    ACGGAGTGAT TCGTGAAATG GCGACTGGTA AAACCGTGAA AGATGTTTCT 
    CCTCACGATT TCGTGAAGGC TTACGCTTCT CACCTCAAGC GATCTGGAAA 
    GGTTAGTGTT TTGATCCTTC TCTCTCAAGT TTGATTGATT CAGTTGAGAA 
    TCATAATGAG GTTTCGAGGA AACAATTGAG AGTTTGAGGG AGCTTCTGAT 
    ATTGTAGTTC TATGTGTTGG TGTGATTTTG AGGCATTGAA TACTATAAAA 
    CGACTGAGGA AGAGAGAATT ATAGATAGAA ATGATAGATT CTTGATGTTA 
    GTGATCATAG GCAGCTAATT GGAAATTCAC TGTACTAATA GTTGTCTCTT 
    TTGGCTGATT TAGATTGAGC TTCCTCTATG GACAGACATT GTGAAGACTG 
    GTCGTTTGAA GGAGCTTGCT CCATATGACC CTGATTGGTA CTACATTAGA 
    GCTGGTAAAA AAAAGCT

AT5G15520.1

Model type
Protein coding
Short Description
Ribosomal protein S19e family protein
Computational Description
Ribosomal protein S19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19e family protein (TAIR:AT3G02080.1); Has 1130 Blast hits to 1130 proteins in 395 species: Archae - 215; Bacteria - 1; Metazoa - 402; Fungi - 149; Plants - 164; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15530.1

Model type
Protein coding
Short Description
biotin carboxyl carrier protein 2
Curator Summary
biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,
Computational Description
biotin carboxyl carrier protein 2 (BCCP2); FUNCTIONS IN: biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin-binding site (InterPro:IPR001882), Single hybrid motif (InterPro:IPR011053), Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: chloroplastic acetylcoenzyme A carboxylase 1 (TAIR:AT5G16390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR