Home
Mutant Lines
52-0398-1

52-0398-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 18432866 [Map]; Strand: c
- AT1G49780.1 - [+] show detail - plant U-box 26
  Distance: -2547; Region: intergenic
- AT1G49790.2 - [+] show detail - F-box associated ubiquitination effector family protein
  Distance: 2485; Region: intergenic

CCTACACACG CCTTCTGCGA CACCGTTTTG CCTTTAATAA AATGAAACCT 
AAAAATATTT TGTTTTGATT TTAGATTATT ATTTGAAATG AATGAATAAG 
TCCAACAGCT AGAAGAGTCA TGCCAAATAA TAAAAATTAA TATATTAAAA 
TACAAAACAA CTCGTATCAT AAATACTAGT ATGTGATTTA GAGTCGACTA 
AAAAAGATAG AGCAAAATCA ATTACATAAT AAAAGAAAAT GTGTATATTA 
ATAATGGACC AACCTCTTTT GTAATTGTTT AACACTTGGA CCAAGCTGGA 
CCCAATCTTA AACACTCATG TCCTCACTGT TCATTAAGAT TCTCTGACCT 
TTTGACTCAT CCAATTTTTT TTGGCTGTAA TAAGTCTTCA TTTTATATTG 
GCGAGGTCCG CCATTAATTT AAAATCGTAT TTGTGATGGT TGGGTATATA 
ATTGAGTACA TAAATTTGTA AATCAAATAA AAAAATTAAC TTGGTATACA 
AAACCTAGAC ATATGGTCGT GGGAGTTCGA CTAATCTTAG TGCTTCTCCT 
CCCCAATTAT TCGTTTGGTG TATAGTGTGT AGTTTTTTCG TGAATTGATT 
GGTCAATTGA CGTTTGATTG TATTGTAAAC AGATTTGCTT ATTATTTTTC 
TTTGAATAAC CAATTCTTTG GTTGNAAGTT ATAGCCANCA CCGGTTAATG 
AATTTTAACA GAAATGTTTG G

3 prime edge [+] show sequence

Chromosome: 1; Position: 18432982 [Map]; Strand: c
- AT1G49780.1 - [+] show detail - plant U-box 26
  Distance: -2663; Region: intergenic
- AT1G49790.2 - [+] show detail - F-box associated ubiquitination effector family protein
  Distance: 2369; Region: intergenic

TGTGTAGGGG ACAGTGCGTC TCCCACTTCT CGCGACCCTA CGGTCTCCGG 
TCAACCCTGC ACTGTCTTTG TTGCACGTGC TTCTCTCTCC TTCACACGTG 
CTTCCCAGCT CATCCTTCTT TTGTTGTGCC TCTTATTTTA GTTATTTATA 
TTTTCTCACA AAAACATAAA AATAAATATT CTCAAATAAA ATATGAATTA 
TTCCCAAAAT CCCTAACAAT TACTGCCACT GTCGGATCAG TTTCCAGGGT 
CTCTTTTGTT TTAATATTGG GGTTTTTTTT GTGAGTTTTT ATGTGATAAG 
ATGGAAACTG GAAACAAGAC GACGACGTTT GTGCATGCAT GTTTATCTTG 
TAATTTATAA CTCAAATATA ATAAAATGGG ATCAAATAAA GGCTAAGATA 
ATTAGTTAAT TCATGCAGCA CGAGAAAAGG TTAGCTGTCG TTTAATTTGT 
TTTGGCGAAA AGAAATTCGG GTCAAAAGCT ATATTAAATT TAAAACACAC 
TCGAGATGAT CAGACAGCTT TTGGCGTACC AATGTGAGAG GAACTAATTT 
GATTTAACCT AAAAGTCTAA AACCCTTTTC TTAAGAGATT AGAGCAGATT 
TCGAAATGGT CCAAATCTAT TTACACTGCC AGCTAACTAT TACCACATAT 
AATAGGGCAT ATATTTCAAT AACTGGATTA TGTGAAGAGA AAATAAACGC 
TGAGATAACT ACAAATTACA TATTGGTTGG AATTTATAT

AT1G49780.1

Model type: Protein coding
Short Description: plant U-box 26
Computational Description: plant U-box 26 (PUB26); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 25 (TAIR:AT3G19380.1); Has 2464 Blast hits to 2403 proteins in 144 species: Archae - 0; Bacteria - 20; Metazoa - 134; Fungi - 16; Plants - 2081; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G49790.2

Model type: Protein coding
Short Description: F-box associated ubiquitination effector family protein
Computational Description: F-box associated ubiquitination effector family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G43260.1); Has 397 Blast hits to 396 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 395; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR