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52-0402-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8242377 [Map]; Strand: c
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 52-0402-1 - 5-prime edge 
    CACCTAATAA ACTTATTTAT AGCAAATAAA TTATAAAAGT CAATAGCTGC 
    AAGTTTTTTT TTTTCNNTTT TACCTTTTAA AAACCTTNTN NAAAAAANAN 
    TAANTTTAAA ANCGNNNNNT NGNNGGGGGG CCGGTTGNNT AAANCANNNT 
    TTTNGTTTTN ANTTNTCCAA AANNANNGGG NNANGTAACC NCCANNANNA 
    AAANCCGGNT TTNAAATAAA ANNNGTNNAA GTTGGTTACC CCANCGCCCN 
    TNGGGTTNNA TNCCNTTTNN ATNNAAAAAN CNGGTANNGN AANTTGGGGG 
    GCNCCCCCCN NANNAAAANN AAANGGGCCC NNAANTNAAN CCTTNATTTA 
    AAAAGGNCNT AAAAANCCCA ANNNCCCCAA ACCCTNCNTT NGGCTTTNGN 
    GGACCTTTTT NAAGGATCCN TNANTNACCC ACCTGGGCCN NNGTGGTTTC 
    NAAANTTTNC CTNTTTNAAA TTGGGGGTNC CANGTNNAAA ATNCCTTTTN 
    CCGGGNNAAA AACGGGNTTT GNTTTNTCCC AAATAAANGG CTANTNNGGN 
    NGNGGATTTT ACGGGGCTTT TTTGGACCAA ACCGNNATTT AAATTTCCTT 
    TTTTGGCCCT TANATTTTAG GGGAAGGGNA ACCAANCCCT TTTTGGTTTT 
    TTTTTTTNNN AAAACCCTTT TAAATTGGCC NNCCTTGAAA AAAGCANAAA 
    AGGGNGNGCT AANNCTCNGG ATNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8242493 [Map]; Strand: c
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 52-0402-1 - 3-prime edge 
    ATTAGGTGTG GTCTTTGATT TTTAGTAAGA AATCAAATTT GCCATCTCCT 
    CTCCTTAGAC TCTAAATCAC CAAAAGTGTC ACAAGAAACA AAAAAACAGT 
    TCTAAATATC TAATGGCTAC CAACTAATTA AACACCCACC AAAATCGAAC 
    CGAGATGGAC CAAACCGGAT ATGATCCAAT TTGTAATCTC TAATCTGAAA 
    TAACTTGATT TCGATTGAAA CCAAAACCAA AGCCAAATTC CATTGAATGA 
    TTAATGGAAT GTTGGAAACT ATACACTCAA TTAGAAGAAA AACAAAAATC 
    AAACGGTTCA ATTCAGTCTA TAGCACTAAA GAACTCAATT GAGTCAGTTT 
    TAACGAATGG TTTTGCTTTG GTTTGTTTGT TTTTCTAATA TTTAACCGAA 
    TTATACTAAA TCTTATCAGA AGATTCCTGG AAACACGGAC ATATTTTGAC 
    TCTTTCTTGA AGAAAACCCA AGATGGGATA AACTTCAAGC TCATAAACCT 
    CCATTTCGAA AAAAAGAGAG AGGAAAACAG TGAATT

AT5G24270.2

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Curator Summary
encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
Computational Description
SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
Link
InterPro Scan - TAIR