1. Home
  2. Mutant Lines
  3. 52-0408-1

52-0408-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25049421 [Map]; Strand: w
      • AT1G67090.1 - [+] show detail - ribulose bisphosphate carboxylase small chain 1A
        Distance: 0; Region: exon1 (5UTR)
      • AT1G67090.2 - [+] show detail - ribulose bisphosphate carboxylase small chain 1A
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0408-1 - 5-prime edge 
    GGGTCTAGGA TACATGAGAT TCAAGTGGAC TAGGATCTAC ACCGTTGGAT 
    TTTGAGTGTG GATATGTGTG AGGTTAATTT TACTTGGTAA CGGCCACAAA 
    GGCCTAAGGA GAGGTGTTGA GACCCTTATC GGCTTGAACC GCTGGAATAA 
    TGCCACGTGG AAGATAATTC CATGAATCTT ATCGTTATCT ATGAGTGAAA 
    TTGTGTGATG GTGGAGTGGT GCTTGCTCAT TTTACTTGCC TGGTGGACTT 
    GGCCCTTTCC TTATGGGGAA TTTATATTTT ACTTACTATA GAGCTTTCAT 
    ACCTTTTTTT TACCTTGGAT TTGGTTAATA TATAATGGTA TGATTCATGA 
    ATAAAAATGG GAAATTTAAA TTTGTACTGC TAAATGCATA AGATTAGGTG 
    AAACTGTGGA ATATATAATT TTTTTCATTT AAAAGCAAAA TTTGCCTTTT 
    ACTAGAAATA TAAATATAGA AAAATATATA ACATTCAAAT AAAAATGAAA 
    ATAAGAACTT TCAAAAAACA GAACTATGTT TAATGTGTAA AGATTAGTCG 
    CACATCAAGT CATCTGTTAC AATATGTTAC AACAAGTCAT AAGCCCAACA 
    AAGTTAGCAC GTCTAAATAA ACTAAAGAGT CCACGAAAAT ATTACAAATC 
    ATAAGCCCAA CANAGTTATT GATCAAAAAA AAAAAACCCC CAANAANGTT 
    NAANAAANCC CAAAAA

AT1G67090.1

Model type
Protein coding
Short Description
ribulose bisphosphate carboxylase small chain 1A
Computational Description
ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 10 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1998 Blast hits to 1975 proteins in 459 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 0; Plants - 969; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67090.2

Model type
Protein coding
Short Description
ribulose bisphosphate carboxylase small chain 1A
Computational Description
ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR