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52-0421-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10524325 [Map]; Strand: c
      • AT1G30016.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -3110; Region: intergenic
      • AT1G30030.1 - [+] show detail - transposable element gene
        Distance: -7506; Region: intergenic
    Flanking Genome Sequence: 52-0421-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    GGGATATTCT TTGTTACACA CAATAGTAGT TATCTTTTCA TTAATGCAAC 
    TTTTGAGTCT TTTACGCATT TGAAGAAACT TGATTAAGAC AAGATGAGAA 
    AGACAATCAC AAAGAACGAA GGAGAATATT AAGTCGAGAT CAATTAAACT 
    TTATCATCTA TGCCACTAAA CTATAACGCC CAATGATCTA TAACGTCTTG 
    AACTTTTATG AGTGCCCATA TCTTTCAAAA TCCTTTAAAG ATGCCCTCTT 
    TTGTTATGTT CTTTTTTCCT TAACATACAC GACTTGGCTG TTTTTTTTTT 
    CGAACANAAG GAAAATGNGA TAGTATGTCT ACTTGTATAT TTCTGATTCA 
    GTAACGCTTC AAGTCACTAN ATTATNCATG GGATAAAACA TCATATATAT 
    ATATATATAT ATATATATAT ATATATANAN ANAANATNTG TGNGAGAAAA 
    AAAATCTCCC CCCNNGNNNT NNNNNNNNCN CTNTCTATAT ATNCNNNNNN 
    NNAANNCANN ACNCTNNGGG GGGGGGGGGN NGNNA

AT1G30016.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G30030.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.5e-30 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)
Link
InterPro Scan - TAIR