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52-0433-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7892817 [Map]; Strand: c
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: -2637; Region: intergenic
      • AT5G23430.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 854; Region: intergenic
    Flanking Genome Sequence: 52-0433-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TCTATTAGAG GCCAAATCAA ATGTACTGCA TTACACATTT 
    AAAGAAGAGG AAGAAGAAAG ATAAACTTGT CGAAAGTAGA GACATAATAA 
    AACAAAAAAC ACAAGAAGTA ATAAAAAGAG AAAAGAGAAA ATCTGCAAAA 
    ACNTGCAATA AATCCAACAG ACTAGAGTTT TCTTGATAAA ACGAAATTGC 
    CAAAACCATG TAACGGAATT GTCATCAACT ACCTAATAAA AACAATTTTT 
    ATTTCTCTAT AATAATAATT AAAAATAGAA AATGGAAAAT GTGAAAATTG 
    ACAGTGAAGT AGCTAGCATT ATCCCATGCC TCTGCTCTCC GTTTACGTTA 
    AGAGACAACG ACCAAACAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7893412 [Map]; Strand: c
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: -3232; Region: intergenic
      • AT5G23430.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 259; Region: intergenic
    Flanking Genome Sequence: 52-0433-1 - 3-prime edge 
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    TATCACCTAC CTCAATGGAT CTTTTGTTAA CAGATTGCAT TAATGGTGGT 
    TGAGTTCATT TTTCATGGTT TAAGTAATAC TTAAACAAAG GCCAAAGAAA 
    TACTATTTTG TGAAAAAATG ATCCAATTAA CATTGTTCAT GACACCTTTT 
    TTATTTGCTT TTCTGTGTGT TTTAGGAATT TTAGTATGAA GAATTTCATT 
    TCCTTTTTTG CTCTATTTTG GCTCATAATT AATAACGAAG AACATAAGAT 
    TGAACAACGA CATGAAGAAA TCCAAGAAAC CGCGAAAAAC CTCTATTCAT 
    GTTTCGAGAG AACACTGAAC ATGTCTCTTT CAGACGAGCA GAAACTCAAG 
    CAGTACTCTC ATAAGAACAA TACACAGCCC AATGGCTCTC TCTCTTTCTC 
    TCTGTCCCTC TCTACTACAC ACCAAAATTA GAACAATGCA GACAAAGATT 
    AGTGACCAGA AGCAGCTAAC TTGGGAGGAT TTTTGCCTTC CAACTCTTTT 
    GGTTAACTTA GTAAGTATCA GCCTTTAGTT TTTGTTAGAC TCCCTTTGGA 
    ACCAAATCCA CATCAAAAAG CAGATGGTTG GGGACTTGGG ATGATGCAGG 
    TTCTTCCACG AGGAAGACGG GCTTTTGCTC TGCGTTTTTG TCCANGGTTG 
    TAAGACTCAT AGTTATTATG ATGAAACTTC CTGAATGCTA GGTTGAGTTC 
    GAGCACAGAC TTGGCCACCA AACCTNCTCT TCTACACAAA G

AT5G23420.2

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR

AT5G23430.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G08390.1); Has 113433 Blast hits to 41213 proteins in 1020 species: Archae - 84; Bacteria - 12091; Metazoa - 46348; Fungi - 25039; Plants - 14792; Viruses - 6; Other Eukaryotes - 15073 (source: NCBI BLink).
Link
InterPro Scan - TAIR