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52-0437-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75881 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -492; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -503; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0437-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACTCCAGAGA GTGATGTTCT CAAACCTGCA
    GTGAGGAGGG AGGATGAGTA GAGTAGAGTA GAGAGCATCA AAAGAGTTGA
    AAATGTAATC CATAGAATAT ACCTGATTAA AGATCGGGAA GAGGCGAAGA
    TGCCCTCGCT GCCACCGTAG AGGAGGAGAG AATTACCGAC ATCGTGGAAG
    GGCTGGGAAG AGTAGATGTG GGCGGAGGCC CCAGCGATTC TAAAGTGTAA
    TGATAGAAGA AATGGGCACA GCAGCGCAGA CAGCTGGATC AGTTTTCCCA
    AATCCATTAT CGGGGAACGA GGATCTCTGA GGCTAACTAA CAGGAAGGAA
    GCGGGAGAAG AGCAGCTGCA GAGTCGCTCT TGTTCTAGCT GCTGCTGACT
    TTGGTGGACC AACCAACTTA ATATAATGGT TTGGGCCTTA GAATGGTTTG
    GGCCTATACC GAGAGGCCCG GCTTACCCAG AAAGAAATGC AGCAATAGTC
    AATGCCACTG CCTGGAATTA CCANCCCGGG CCGCNCCCCN NNNCCCNTTT
    TNAANNANGG GNNACCTTCN NNNNANNNNN TNGNNNNANC CNTNCNANNG
    ANAAAAAANC NTGGGANANN ATNNTNTGGN GATNNNNNNN G
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75923 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -534; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -545; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0437-1 - 3-prime edge
    CAAGTCTGGA GGACAATTAC CGGTAAGGGC CACCGCAGCA ATGGGTTAGT 
    TCAAGCAGTG ATCTTTGAAG CCTCCGATCG TAACAATATC GGTGGTTCAG
    CTTACGGAGG CCAAAGATCT ATTTGCTGCA CTCCAGATCT GGCCAAGCT

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR