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52-0438-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185233 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -719; Region: promoter
    Flanking Genome Sequence: 52-0438-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AGTCCCACCC GCTATGTAGG GATACCCTAT 
    CTAGTCTTAA CGAGCTTTGA TGCATGAAAA AATTCGAAAA CAATGCTTGA 
    ACAAGTAATT TTGGGTCCGT AATATAGCCC AAATCACNGA AAATGCCCGA 
    AAAAGTACCT TAAAGGTCAA AATTTGGGTT TGACAAAAAG TCAATGGAAA 
    AGTTCCATTG TCCTGCTTAT TTCGTCGGAG GGCTATCTTT GGGCTTTCCG 
    AAAAGGTATC ACATGCTGAG TTTGGCCTCA CGGTCTAAAA GTTATGGAGT 
    CATAAAGTTT TAACCAAAAA AAAAAGGGTT AANCNTAAAA ANGGGNNNCN 
    CCCNNNGGNC TNCCNGGGNG GNNNCCCNTC NNANNANNAC TNTNNCCNAN 
    NCCCNCTTAA NTGNGNANTT NTAANGGNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185727 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1213; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4816; Region: intergenic
    2. Chromosome: 5; Position: 11186229 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1715; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4314; Region: intergenic
    Flanking Genome Sequence: 52-0438-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTGGGTGGGA CCCACGGCGA ATGGTTCATC AAGTCTTCAA AAAAGAATAT 
    ATACGATTGC ATTGCATATA CTAACGGATG CGATCATACC AGCACTAATG 
    CACCGGCTCC CATCANAACT CCGCAGTGAA GCGTGCGTTG GGCGAGAGTA 
    GTACTAGGAT GGGTGACCTC CCGGGAAGTC CTCGTGTTGC ATCCCTCTTT 
    TATGTTTAAC CTTTTTTTTT TNGGTNAAAN CTTTNTNACN CCNTANCTTT 
    NAANCCGGNN GGCCAANCTN ACCNTGNNAN CCNTTTTNGN AAANCCNAAA 
    AATANCCCTC CNNCAAANNA ACCNGGANAN NGNANCTTTN CCNTNNNNTT 
    TTNGNCANCC CNAANTTTNN NCCTTNAAGN CCTTTTTNGG NCTTTTNCGG 
    NATTGGGNCT TTTTTNCAAN CCCAAANTTN CTTNTNAAAN CTTNGTTTNC 
    AAATTTTTTN NTNCNTAAAA NNTNNTNAAA ACTAAANGGG GTTTCCNTNC 
    NTAGGGGGGG GNNCCCACGG NAAANGGTTN NTNANNTTTT NAAAAAAAAN 
    TTTTTCCAAT GGCTTNGCTT TTCCTANCGG NNNCAATCNT CCCANCCTTA 
    NNGCCCCGGN TNNCCANCCG GGGCCGTNNA CCCGTGNNNN NTTTTAA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR