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52-0440-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17041362 [Map]; Strand: c
      • AT5G42591.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 4582; Region: intergenic
      • AT5G42600.1 - [+] show detail - marneral synthase
        Distance: -12155; Region: intergenic
    Flanking Genome Sequence: 52-0440-1 - 5-prime edge 
    NTACTCCACT NAANANCNAC TTATAGCTAG GTTGTGAGAT NACAGAATCG 
    TTGTTTAGCG ACACCCTAAC TACAGATTTA AATCCTTTTC GTTGATATGT 
    TATTGCTATG TTGTTATTTA ACGACGTTTT GTGGATGTCG CTAATAGGTG 
    TCTNTATGTA CATGTTTTCT NANNNNGCAA AATATCGAAA AACCAGATTG 
    AAAACCCCTC TTGTCAAGTT CTACTGAATA CCAGAAAAAC AAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17041426 [Map]; Strand: c
      • AT5G42591.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 4646; Region: intergenic
      • AT5G42600.1 - [+] show detail - marneral synthase
        Distance: -12091; Region: intergenic
    Flanking Genome Sequence: 52-0440-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    AGTCACAAAA AGGTCATGGT GTCTTAAACC TCATATCCTA GTCAACTTAA 
    AGTCATAGTC TACCCTATTT GCATATATCT ATACTTCATT TAGTTTTAAT 
    AACTATGTTT GGCATTTAAA GGTTTAAATT TGTATAGCAT TTAAACATTT 
    GGGCAGGGGT GGATATTTCA GTTTAAGTTC GGGTTATGGT AAGTTTGGTT 
    AATTCAGTTT TCGTAAACCA AATTCAACCG AAATTAGTTT AGTTTGATTT 
    GTGTTTTGAT TAGTTTATGT TCGATTCGGT TCAGGTAGAG ATTTGGTTCA 
    GTTTTAATTT GGTTCGGTTC CATTTGCTTA AAAATCATAG ATATGAAAGT 
    TGGTCAACTC TCTCCATATG AGTGACAAAT TATCACACCA GTGAGTGCCA 
    CATGTCATTC TAAATTAATA TCATTAAAAT ATAACAAAAT TTAGTGATAA 
    AAATTTTAAA GTTTCACATT GCATTAAATC ATCCATTAAT CTCACTCTTA 
    ACAAAATATC TTCATTTAAA AGAAAAAATA CAAAAAATCA TGTTAATGTA 
    TCAAACACTA CTTTCATTTT ACTTTTCTTG TTTTTGCTAT TTTATAATAG 
    TCATTACTTG ATAATGACTA GAAATTTTCG TGTATTACAA CTTAGTTGTT 
    TGCTACTTAA AATTTTTTAG TTTAGTAATT TTAACTTAGT CTTTTCTTTT 
    TATTACATCT TTTGGNTTAC ATGATATGGT CTTTTTTGG

AT5G42591.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42600.1

Model type
Protein coding
Short Description
marneral synthase
Curator Summary
Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.
Computational Description
marneral synthase (MRN1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases family protein (TAIR:AT1G78500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR