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Mutant Lines
52-0446-1

52-0446-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 23428910 [Map]; Strand: w
- AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -46; Region: promoter
- AT3G63450.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -46; Region: promoter
- AT3G63450.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (5UTR)

ATCCTAGTTG CTTCGTACAC ATCCATGGAA ACACACTCTT TGCTCGATGA 
GACCTTGTCT CTCTCTCTCT CTCGCTTAGA AACACTGCTA TTGNTGTCTT 
GTCTTGTGTA CAAAAAGATG TNTGGTTTCT TGTCTTGGAC TTTAGCAAAG 
CTAAAAAGGC TTTCTTTCTC AACTACCTTA CCACCATCAT CACTCTAGTA 
CCAGTGTACC ACTCCACTCC ATACCTAAGC TACCAGCNCG GGCCGTNGAC 
CACCGGGCCC CCTATAGCTT TGTGTNTTCT AACAAGGAAA CACTACTTAG 
GCTTNTAAGA TCAGGNTGCG GNTTAAGTTC TTATACTCAA TCATACACAT 
GACATCAAGT CATATTCGAC TCCAAAACAC TAACCAACCT TNTTNTTGCT 
TNTNAAAGCT

3 prime edge [+] show sequence

Chromosome: 3; Position: 23428794 [Map]; Strand: w
- AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)
- AT3G63450.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)
- AT3G63450.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)

ACTAGGATCG TGCTCTCTAG AATCCAGAAC TTAGACCCAG CTAATGCTTC 
CAAGATCATA GGTCTTCTCC TCCTTCAGGA TCACGGTGAG AAGGAGATGA 
TAAGGTTAGC TTTCGGGCCT CAGAATCTCC TTCATTCTGT CATAGCCAAG 
GCCAAAAAGG ACCTCGAAGA GCGGCTTTCT TTCTTGACTC CGAGAACCGC 
CGAAGATTTT GAGTCCGATT TAGGGTTCGG ATGGGGTCAC CGCAAAGAGG 
TGCTTAGGTC CAACTCTGTT CCGCCGAGAC TTGCCAATCA GTTCACCGGT 
TATCCATTCT CCCCCAAAGG TGTCAACTTG CAACAGAGTG AAGCCCAAAG 
GTTGGAGCTT TTCTTTTTCT TTATTTTTTT CCTTCATCTG TATGGACGGG 
TATTCTGAAA CTTTGGTTGG TAAAATGTGT AGCAGAGCTG CTGCTTTGAT 
GATGGGCGAT GACTTGCACA AATTGGGAAT ATGGAGGCCA GAGAGGATCG 
ACCTCTCGGC CACGGCCTGC CCGGCGTCTA GACAGATCTA TCTGACTTTC 
CCGGCTGACA GTATCTTCAG GGAAGAAGAT GTTTCCGACT ACTTCAGGTA 
TTACTCTTGT TTGGAACCCA TTCATTCTTC TTGTTGGATG TTGTCTACTT 
AAAGCAATGG TGGTGCAGTA CGTTTGGGCC AGTTCAGGAC GTGAGGATAC 
CTTACCAGCA GAAGANGATG TTTGGGTTCG TGACCTT

AT3G63450.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2).
Link: InterPro Scan - TAIR