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52-0448-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7973229 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-0448-1 - 5-prime edge 
    CNCCTNNACN AATGTTTNTG TTGGTAATGT TACNTACTCG GGCTTTCTTG 
    GATGCGAAGG CAACAAAGAT GGAGATGTAT ATGGTTTCAA TGAAGCAACC 
    AAAGCTGTTG ATGGTGACGA GAAGGAAGAC ATCTTTCTTC TGAGTAGCGT 
    AGTATANCCA AAGCATCGCG CTGAAGAGCG CCACCACATA GGGAATAGAT 
    TGAAATCCTT CTGTGNTTCT CCTCTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7973113 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 52-0448-1 - 3-prime edge 
    TATATGTGAT GTTTATTGTA TGTGTGATAT TTATTGATTA TTTTGGTGCA 
    GATGCTAACG GTGAAGCTCT TGTTGCTAAT GAACTTTGGA GGGTTCTGTT 
    TGATTCTCCT CCTCTGCCAA TTCTTGGCAA AAGGAACCAC ACNGTGCNGA 
    AGATCATTGG AGGTATCTGT GTCGGATTCT CTGTCTGCGT TTTTGCTGCG 
    CCGCTTAGCA TTATCGTAAG TAGTAATAGT CTCTAGCTAA TGTTACTACA 
    GAAGTATATA TGAAGAAAAT ATGATTTTTA CTAATTAGGT TTGTATTAAA 
    AAAACAGAGA ACGGTGATAA AGACGAAAAG TGTGGAGTAC ATGCCGTTTA 
    GCTTATCCTT GACTCTTACC ATCAGTGCGG TCATATGGCT CCTTTATGGT 
    CTTGCTCTTA AGGATATCTA TGTTGCCGTA AGTCATCATT ATCATAATCA 
    TTATCGTTAT TTGCATGAAG TGGTTGCTTT TGTTTCTATT TTACCTGAGC 
    CTATGATGCT AATCATAGAT AAAGAGAGAT ATGAATT

AT5G23660.1

Model type
Protein coding
Short Description
homolog of Medicago truncatula MTN3
Curator Summary
homolog of the Medicago nodulin MTN3
Computational Description
homolog of Medicago truncatula MTN3 (MTN3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR