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52-0451-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74009 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0451-1 - 5-prime edge 
    ACTTCTCGCA TGCACTTTTT TTTTGGTCAN AAAACAATTT CGACAACAAA 
    AGGAAAATTA ATAAGTGATG TGTTTATCCC CCGGAAATCT AGCTAAACCT 
    ATAGATGCCA ACCTGATATA GTTTTGGGGG TAGATCGTAA NAAAGATAAT 
    GATGAAGTGA TGATGATAAC GANCAAAGTG AGAGGGAGAG GGAGAGAGAG 
    AAAGGAGGAA GAGTCGAANA GTGATTGTTT TTTTTTTTTA AANGGTTTTT 
    TTNGGGNAAN TTTTAAANTT TTNGGGGGGG NCCCANAAAA NCCCANNNTN 
    NTTTTTTTAA NAAANGGGGN NNNTTNGNAA NNAAAAAAAA AANTTTNNNN 
    TTTNNTTNNT NGGGNAAAAN CCCCCCCCAA AAANCCNNNA AAANNCCCNT 
    TTNNTTNNNN CCCNTTTTTN AANNAAAAAG TTTTTTNNTT TNNTTAAAAN 
    GGGNNNANNA AANTNCCCNN NNNANCCCTT TTNCCNTNNN NNNNAAGGGG 
    NCAAAAANNG GNNNAANTTN NTTNCNTTTT TNGNAAAAAA AAAAAAAANN 
    NNGCCNAAAN NGNAATCCCN CCTTTNAAGG GGGGCCCCCC CTNTTTTNCC 
    CCCAAAAAAA CCTTTNNNNN NNNNGCCAAA AANCNCCCNT TTTTTTTTTT 
    AANTTTTAAA ANAAATTTTT TTTTTTGNNT TNNTNCCCCA AAANAACCCA 
    CCCCNTTTTA NNCCTTTAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74111 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0451-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    AAAACTTATA AATTCATTAT AAACAAACGA GATTCTTTGG AGTGTATATA 
    TAAAAGGTTG AAGAAATGAA TGGATAAGGT TTTGTGAATT AGGGTTTTTG 
    TTTTCTTATA TATATATATG AAGATGTTGA AATAAAGAGT AGAAGATGGA 
    AGGTTACNGT CTATTGGCTG GTGGTGGCCG AGGCATCTCT TGTAGATGAT 
    CCACTGATCT TCCGTTGCGA GTCGCCATAA CCAAATGCTC GTTCGGGTGG 
    TGAGCTGAAG CGTGATGGCT CATCATCATG TTCATGTTTA TATTCTGCCC 
    TCCGCTTCGC ATTTCCTCCT AATAAATGAA ATCAGCAAAC TAATTGGCAA 
    AAAAAACTTA AAACACTAAT CAAACCAAAC TACTTTGATA TGATGTTTTC 
    GAAAGAAACC CTAGTTAACT AGCCATTGCC AAACTACTTA GATCTATCCC 
    GGGATGCTAA CAAAATTAAA CATTTTTGGA TTGAGTTTCA CAATTTTGCG 
    TTTCTCGAGA AGAAAAGCCC TAATTATTAC TCTCTGTTTT TTTTATGAAA 
    GAACCCTAAT TTGTTTCGAT GAATGAAACC GATGTACCAA AAGATTTGGA 
    GGAGGAGGAG GAGGAGGGGG AGGTAAAAAG GAATGGCCAA GGTTGGAAAC 
    GGATGGAAGA ANAAGAGCTC TCATGCTCAC GGGCACCGAC AAAAGGTTCN 
    AACAGTGGCC GCATCTGACC GTCACCGTCT TGAACAAAC

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR