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52-0486-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7979189 [Map]; Strand: c
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: -5264; Region: intergenic
      • AT5G23665.1 - [+] show detail - pre-tRNA
        Distance: -2209; Region: intergenic
    Flanking Genome Sequence: 52-0486-1 - 3-prime edge 
    TCTATTACTT GCCTTGGTTT ATGAAGCAAG CCTTGAATCG TCCATACTGG 
    AATAGTACTT CTGATCTTGA GAAATATGTC TTTCTCTGTG TTCTTGATGC 
    AATTAGTCCT GAATCTTTTG ACTGCATCTT TAACCTTCTT GGGAAGGTAT 
    TTGATCTCCT GGAGATTGTT ACTCTTTATT GGACAATAGA TGAGTGATGA 
    TTCCACTCCC ATGTAAAGGA GAACGAGATA ATATCAGCAC ATTGTGTTTT 
    TTTGCCCTTT TCTTTGTTTT TCTCTCTTTC TCTTTCGCTT CTTTATTTTT 
    TTATAAATAA TTTGCTTCTC TTTTTTTTTC CTAACATACT AANAACAATG 
    ATGTTGGTCT TTTCCAAAAT CTGATANAAC ACTNGGCAAC TTGNGTAGCT 
    GTAGTATAAT NGTATTTCTT TTTATCGCAA TAATTAATGC CAACATATCC 
    TCAATTATAT ATATTATCCT ANCTAATCGT ATTTGCACCG AACGTCTATT 
    NCTTATATTT TTCTACTCTA TTAATTACTT TTATTCCCTT AAAACATTAA 
    CACTAATTTT TATTGCGTAG AAATAATCAT ATTTCATTAT GTAAGAAGAA 
    AATNATTTTA ATANTGGAAT ATATTTTGNA CATATATAAT GNGTAAAAAA 
    TTAATTTTAA CTCCTATTAC TAATTNGATT AACAATTAAA CCGCATATTT 
    TCATTACAAT GGCACTCTTT ANCAGTCTAG TATCTA

AT5G23660.1

Model type
Protein coding
Short Description
homolog of Medicago truncatula MTN3
Curator Summary
homolog of the Medicago nodulin MTN3
Computational Description
homolog of Medicago truncatula MTN3 (MTN3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23665.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gln (anticodon: TTG)
Link
InterPro Scan - TAIR