1. Home
  2. Mutant Lines
  3. 52-0508-1

52-0508-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7983055 [Map]; Strand: w
      • AT5G23670.1 - [+] show detail - long chain base2
        Distance: 0; Region: intron5 (CDS)
      • AT5G23670.2 - [+] show detail - long chain base2
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 52-0508-1 - 5-prime edge
    TTTATGATGA AGGCATATGT TGTCTCTTTT CTAAAACCCA TGCTTAAGTT 
    GATATTTTTT CCTGTGATGT CTTGTATACA GGGAGGGTTG ATAATAAGTG
    ATTCTTTGAA CCATAGTTCT ATTGTCAATG GTGCTCGAGG TTCTGGAGCC
    ACTATCCGTG TTTTCCAGCA TAACAGTAAG CATTTGTTGT GTTTCAGCTT
    CAGAGGTTCT TTCCATATAA TGGATGGCTT ACATGTATAT TCTCTTGCTT
    GTGTTTCTTA GCGCCTTCCC ATTTGGAACG AGTTTTGAGA GAACAAATTG
    CAGAAGGTCA ACCTAGGACA CATCGACCAT GGAAGAAAAT TATTGTTGTT
    GTTGAAGGTA TTTACAGCAT GGAAGGGGAG ATTTGTCATC TACCGGAAGT
    TGTGGCCATA TGCAAGAAGT ATAAGGTGAG ACAATATTCC TGAATTACTG
    ATTATGAGAA TTGGTTGATA ACTGAAACTA TTTTGTGTGT GCAAATACCC
    CTTAAAAAGT AACTGGGTTC ACTATGTGCC ACATTCAATA TAAGCGATAA
    ATTAAGGAAC TCTATTGACT AAAATTACCC TTTGAAATGC CATATTTTCT
    AAACTATTGG GAGTTTTTTG TTGCGTGAAA AGATACACCT AACTTATCTT
    CTATCTTCGT TTCAGGCATA TGTTTATTTG GATGAAGCTC ACAGCATTGG
    GGCAATTGGT AAACAGGAAA G
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7982939 [Map]; Strand: w
      • AT5G23670.1 - [+] show detail - long chain base2
        Distance: 0; Region: exon5 (CDS)
      • AT5G23670.2 - [+] show detail - long chain base2
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-0508-1 - 3-prime edge
    ATCATAAAGG GTAAACCAAT GCATACCTTT CCAATCAAGA CTGGAATGAT 
    AGCCGAATTT GTTGCATAGC CCATGCCAAA AACAACAGCA GCAGGCTTTC
    CCACAAACCT AGTAACACAT TCCTCAAGTT CTGCATGCAC GGATGTAGTT
    CCTGATAGCA GAAAACAAGT TTGTTTAGAA ACAGAGCCAA AATGGTTCTT
    GAATCTATAG GCAAAGACAC TTTACCTGCA TCAACACGAG AGCTACATGT
    ACTTGCTGAA AATTTCTTCA AGGACTCAAT AACACGAGGC GTGCAATATT
    CATCAAAAGA ACCAAACCCA AGATAATTGT AGGACCCCAA ATTGAGGCAC
    CTGCTAGTTT TTGTTGTTCG CCTGCACAGA GTCAACACCA ACAAAGGTTT
    ACTCAGCAAC CTTCTTAATT TAGAATT

AT5G23670.1

Model type
Protein coding
Short Description
long chain base2
Curator Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description
long chain base2 (LCB2); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: photomorphogenesis, sphingosine biosynthetic process, sphingolipid biosynthetic process, pollen development; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23670.2

Model type
Protein coding
Short Description
long chain base2
Curator Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description
long chain base2 (LCB2); CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 10446 Blast hits to 10416 proteins in 2172 species: Archae - 77; Bacteria - 7037; Metazoa - 738; Fungi - 589; Plants - 234; Viruses - 9; Other Eukaryotes - 1762 (source: NCBI BLink).
Link
InterPro Scan - TAIR