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52-0509-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13590553 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6579; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11247; Region: intergenic
    Flanking Genome Sequence: 52-0509-1 - 5-prime edge
    TNTANNAAAA NNNCAAAATC GGTTATNCGA TAACGGTCGG TACGGGATNC 
    NGNCNNAACN AGTTTNATAC CCTGGTTAAA NGCACGCGNC GGACNAANTN
    CTTCCCCTCT CTGAGCCNNG TGAGATCAAN CNGNANNNGA NTCANANACA
    CTATTAACCT TCTNCTTGCT TTCTCAAAGC TNTCATGTTG TAGCCAAAGN
    CCATATGAGT CTTNGGCTTT GTGTCTTTNA ACAAGGATAC AATTCTTTCG
    CCTTTAAGAT CGGGTTGTGG TTTAAGTTNT TATACTCAAT CATACNCATG
    AGATCAAGTC TTATTCTGAC TCCAAAACAC TAACCAACCT TNGTATTGCT
    TCTCGAAGCT ACCATNCCGG T
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7489804 [Map]; Strand: c
      • AT5G22555.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0509-1 - 3-prime edge
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATAT 
    CGCAGTATGT CTAATCCTGC TTTTGTTCCT AACGCAAGCA CTTGGAGGTA
    TCTACCTAAA TGTCTTTTTT ATTTAATAAC AATTAAAGTC ACTTTATGTT
    TCAGAAGAAA CTGAAACAAC ATAAAAGAAA ACAATAACAA GTTTCATTTT
    AATCTGTTGG ATTAGATCTA TAATACTAAA GTTTATTTGG CTAGAAAATT
    CTTGAAGAAA TTGTATATAA TTTTAACATA CATGTATTTG AATTGTAGAC
    AAAACTAAAT TCAGATATTG TCAGTTACTT TTGTGTTATA ATTTATATTC
    TTATTTAATT ATGAGATTAC CTCCGTCATG TTTTCATAGC TTGGATCATA
    ATCTTGTAAT GGTTTTTCTA TATAAGCAAA TGTATGCAAT GCTGCTGATG
    GAACCTGTAA AGCCGGAGCA AAGTCAGAGA CATATGCAGG AGACGAGTTT
    GACCCCTTTC ACGAAGCTGA TCATTATGAC GACGGTGATG AATGATGATC
    GACGGGGGAT ATGCATTCCC CTGAATCTTC TCATATTTAA AATCCAATAA
    TGAAATGAAA AATGTGTGTT TTTCAATAGT TTATTTCCGG GAAAGTGGAC
    ATTTTCTCTT TTCCTATTCC TTTTCTCCCC ATTTTATACG AGTTGTGTTA
    TATTCTTAAT ACTTTTTCTG ATGAAAACGA CCAGCATACA TCACCACACT
    CTACAAGGAA TTTGTCAAAT ATGCNACGGG TTTATTATCG AGCATGAGGA
    AN

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G22555.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR