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52-0518-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24217805 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -114; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -177; Region: promoter
    Flanking Genome Sequence: 52-0518-1 - 5-prime edge 
    CCANACTGTA TTGTCTTCTA AGCTTATTNC NACNAATGGA AAAATAAAAC 
    ATGTGCTAAC TACTTTTACT TCAATGCTCC ATGANCCGAA CCGATATGAT 
    TTTANTCNAA CCGAAAAAAT ATTATCCTAA CCANACCAAA CCAATNAAGG 
    GTGAACNTAT AATTTAAAAT TCAAATAAAT GGGCTTTAAA GTCCGGCCCA 
    ATCGATTTGC TTTAAATGAC AATAATAACC TGAGATTATA GAGAACGTTG 
    GTCCGATCTT CTTTCAATTT CAAGTTTTTC AACCTCTTCC CGCTTACGAN 
    GCCGGGATAT TCTATCAACA GTCGTCTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24217729 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -38; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -253; Region: promoter
    Flanking Genome Sequence: 52-0518-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCTGT 
    GTTATGCTAC AAAAGGCAAA ATCTCTAAAG CAAACCAAAA GATCGGAGAT 
    CTATTAACAA AGCTCTTTTA CTTTTCTATT TTCAAGAACC ATTTTCACCT 
    TCACTTTCAC TAAAAGAGTT AGGGTTTCAA AGAGGTGAAG ATGATGAACA 
    GAGGTTTCTT CTTTAGACTC TTGTTTTTAT GTTAAGATCT TTATGCTATT 
    GTTTGTTCTT GATTCTCCAA TCACATAACC TATCCTATGT TCTGATTTTT 
    TTCTTGCTTT GGAACAGGAA TTTCTGTGGA TGATTGTCTT CCAAAGTTCT 
    TCAAAGTGTA CTTACCTGAT GATTCCGGAG ATGATTTGGT AAAAATACAC 
    TTCTCTCTCT GTTTTTGGTT ATATGTAGAT TTTTAGTTTA TTGAAACTTT 
    TAGATCCTTC CTCTTCAGGA ATTACCCATC TCTTTCAACA GCTTTTTACC 
    AAAGTCGTTG CCTAAAAATG TAATTGTTAG AAGCATTTAT GGAAACATCT 
    GGAAAGTGGC GTTTAGGAAG TTTTGTGGTG ATAGTGAGAG ATTTGTTATG 
    GTTAATGGGT GGAAGACGAT AGTCAAGGAC GAAGATTTGA AAGGTGGAGA 
    GTTCTTAGAA TTTGAGTTTG ATGGCTCTTG GTGTTTCAAT TTCTGTATCT 
    ATGGTCGTGC AACGTGTAAA AGGCTTAGAA GTTCAGTGCA AATCACNGNT 
    CTTGATGACA ATGATGATGG TTTTAATGAT

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60150.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR