1. Home
  2. Mutant Lines
  3. 52-0522-1

52-0522-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14117878 [Map]; Strand: w
      • AT5G35965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0522-1 - 5-prime edge
    CNNGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTGTAACTG ATCAATAGAC TGTCGCGAGC TATCCACATT
    TGTATTGGAT GATGTCGTCA TTGAAACAAA TCAAGAATCG AGAGATGATA
    CTGAAATTGA TTAGAACGAC GAACCGAAAA ACGATTAGAG TTGAATCGAT
    CGTGATGTAG AACGAATCGA TCTGAAAGAT GAAGGAGATT CGAGCTTGAG
    CTTCAACNTG TTAGTGAAAA TCGCGAATGT GATTGCGATT GGTGATTTTG
    AGACCTCTAT TGATGAATCG GAGCTCAGTA AAGAAAAGAA ATGGAAGATT
    TAGGGTGATA ACGATGGTGA TTCCATAGAA ATTGGATGAA ATCGAAGAAG
    AAGATGAGTT TTGGCGGAAG AAGAAACTCT GAGATTTCTG TTATAGTGAG
    AGAAAATGTC TTTTGTGCTC TGCTACCATA TTAACTATAG AGAGATAAAG
    TGAATTTTCC GTATATTATT CTTAATGATC AAATGAATCA TACATGTTCC
    TTATATACAC TTAGAGTAAG CTATAGGAAA CTTTACTCTA ATTATAAACA
    TCATATACAT ATGTTAATAA AAAAAAAACG TGGACTTTAA TTTNTTCGAC
    GTCNTTTTNT AGGACCCCGA ATTGAGTTCC TAAGTTCAAC TAGCAAATCG
    NNNGGNNCTT ACTNGGTTTT TCTTTGGTGG GGCAACCTTG TTTTNTNTAA
    CAAAAGGGCT TACNAAAAAA GCTACCTTTA NAGGTNGGGC T
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14117828 [Map]; Strand: w
      • AT5G35965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0522-1 - 3-prime edge
    TGATCAGTAT GAGAATCCAT TCTTTCTTCA CAGCTCCGAT CATGCCGGAT 
    TGGTTCTAGT TTTCGATCGT CTCACTACTG GAGCAGATTT TCATTCTTGG
    AGAAGATCCG TTCGTATGAC ACTCAATGTA CNGTAACAAG CT

AT5G35965.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.9e-244 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR