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52-0526-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8464279 [Map]; Strand: c
      • AT3G23580.1 - [+] show detail - ribonucleotide reductase 2A
        Distance: 1464; Region: intergenic
      • AT3G23590.1 - [+] show detail - REF4-related 1
        Distance: -3170; Region: intergenic
    Flanking Genome Sequence: 52-0526-1 - 5-prime edge 
    GAGATGATGC TACTGCNCNT CTNGAANNGT GATGTNCCNN GTCATCTANC 
    NTTTGTGAAA TTTCTNATCT TTATATACCA ATANTNGGAA NTTTAACCCG 
    TNTGTTGTGA TAGGGTTTTG ACGTTCCAAT ACTCATGAAG TANAGTCGTA 
    GAGATTATGG ATTTATTTAT TTTCAATAAA TTGTTATGTG TGATCATTTG 
    AACTCGTAAA ATTAGATTTG AGTTTTTTTT TTACNGAAAC A

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8464395 [Map]; Strand: c
      • AT3G23580.1 - [+] show detail - ribonucleotide reductase 2A
        Distance: 1580; Region: intergenic
      • AT3G23590.1 - [+] show detail - REF4-related 1
        Distance: -3054; Region: intergenic
    Flanking Genome Sequence: 52-0526-1 - 3-prime edge 
    ATCATCTCCA CCTACTCCTA ACCACTATCT TTTTCACTCA CTTTTTTCCT 
    CTCAATATTA TCCTATTTTG CATTGATTTG TTTACACTTG GTTAGGAAAA 
    ATGGAAAGAA CATTTGCCAT CAGTTTCTGC CACTTAAAAC CCAAAAAGTT 
    AAATTAATCG AATTNGGTTA TNNGCNAATT

AT3G23580.1

Model type
Protein coding
Short Description
ribonucleotide reductase 2A
Curator Summary
Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development.
Computational Description
ribonucleotide reductase 2A (RNR2A); CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Ferritin/ribonucleotide reductase-like family protein (TAIR:AT3G27060.1); Has 9602 Blast hits to 9597 proteins in 2376 species: Archae - 34; Bacteria - 4358; Metazoa - 261; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3795 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23590.1

Model type
Protein coding
Short Description
REF4-related 1
Computational Description
REF4-related 1 (RFR1); BEST Arabidopsis thaliana protein match is: reduced epidermal fluorescence 4 (TAIR:AT2G48110.1); Has 143 Blast hits to 139 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR