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52-0535-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14224752 [Map]; Strand: c
      • AT2G33585.1 - [+] show detail - unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; ...
        Distance: -585; Region: promoter
      • AT2G33590.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0535-1 - 5-prime edge 
    CNCTCNGNTC CNGGATNTNG GTCAGGANNC TACNGCTGNN CNNTGNTCCA 
    GGACNAGAGT CCGGGACAGA ANATTCNNTN CNNNGGTCTC TNACAGTNCC 
    NNGGACNAAG TNATCCTTNT AGANAAGAAC ATCGACCACC CNCNAACCCN 
    AAAGACCTNN NGTTNNGGTT ACACNAACCT TTCCTTTGTG AACATCAGCC 
    ATTTTCGATC TCTTGATTGT TCGGAGCAAA CAAGAAGATG GTTACTAAAA 
    TCGGCTGAGA AGATGGTTCT CGATTTTTCT TCTTCCTTGT CCTTGTCCAA 
    ATAGCCAGGT GGGTNTGCTA CTGTTTGACC ATCTGTAGTG CCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14224869 [Map]; Strand: c
      • AT2G33585.1 - [+] show detail - unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; ...
        Distance: -702; Region: promoter
      • AT2G33590.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0535-1 - 3-prime edge 
    CTTGTGTGTG CGTGCGAAGT AGAAAGTCTG TTCCCAAAGT TTGATTTTTT 
    TCTTAATCTA CTTTCTAGGT GTTTAGATTC GCTAGTTTCT GTTCTCTCGA 
    CGGATAAAAG CCTTAGCTTT TGATTTTTGT TTGTTGTTCC CAAATCATTT 
    TAGTTTGCTT CTCTTCTTTT AGTGTAGTTG TTGTTGTTCT GATGAAGAGT 
    TTCGCATGGT TCTTGTTATA GATAATGAAA AGTATGCTCA TTTGAAGAAG 
    CTCGAGAAAG CTGGTGACAA ACTCAAGCTC TTCAAGGCTG ATTTGTTGGA 
    CTACGGCTCT CTTCAATCTG CTATTGCAGG TTGCAGCGGA GTCTTCCATG 
    TCGCTTGCCC GGTTCCACCA GCTTCAGTCC CTAATCCTGA GGTGAGGATT 
    TCACTTCACT CCTGTAATCT CACTGGGGAT ATATAACATA GTCTCACTCT 
    GCTTCCACTG GTTTTGCAGG TAGAATTGAT CGCACCTGCT GTGGATGGCA 
    CGCTGAATGT GCTTAAGGCA TGCATTGAAG CGAATGTTAA GCGTGTTGTG 
    TATGTTTCCT CTGTAGCTGC GGCTTTCATG AACCCTATGT GGTCAAAGAA 
    TCAAGTATTA GATGAGGCAT GTTGGTCTGA CCAGGAATAC TGCAAGAAAA 
    CTGAGGTTAA TGCATCCTCA ATCCCTCATC TCATCTCACT TGTTATATAT 
    CACATCTTTT TTTTTGCTGA CTTTTAAATT CCTC

AT2G33585.1

Model type
Protein coding
Computational Description
unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G33590.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G33600.1); Has 13062 Blast hits to 13044 proteins in 1974 species: Archae - 275; Bacteria - 5592; Metazoa - 467; Fungi - 894; Plants - 2514; Viruses - 60; Other Eukaryotes - 3260 (source: NCBI BLink).
Link
InterPro Scan - TAIR