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52-0538-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7333223 [Map]; Strand: c
      • AT5G22110.1 - [+] show detail - DNA polymerase epsilon subunit B2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 52-0538-1 - 5-prime edge 
    CCAGTCTCTG ATTTCTCAAA GGGGAAGGAA ATGGGTGATG GGAGTGATAT 
    CACAGTTGGA AGATGGACAT TTCTACCTGG AAGACCTTTC AGCTTCTGTA 
    GAGATTGATC TGTCCAAAGC AATATCCTTT TTTTAAGTTG GTTCTAAAAT 
    CTGCAAAAAC TGGACATAGC ATTTCAACAT ATTGTTTAAT GTCTCATGCN 
    TGATAAAGAC ATAGGAAGGA ATTGCGTTTG AGTTTTTTGT GCTTTGAATA 
    GTTTTCTTTG ACAATCAGTA CAAGATAACA ACAGGATTCT TCACAGAGAA 
    TACTATAATT TTGGCAGAAG GCGAAATGCA GGTTAACGGT ATCTTTCAGG 
    TAATTAGAAT TGAAGGTGGC AATTTTGGGC CTTTCTCTCC CCCATTCTGA 
    GTTAATTACT TTTTAACTAG GGAGATATTT GTATAATTTG CTGAGGTGCA 
    CATTCATAGA TTTTACGATT TTGTTTTATT TTTCATGTTG GGGTCAAGAT 
    ATTAGGCTAT TAGCTATATG AAGGATCATA GAACTAAGTC ATGTATAGGG 
    TCCTTTCTGT GACAAAACAT ACGTACACCT GTCTCCAATA AACACTTGAT 
    CAGATTGCCT GTAACAAAGC TCAGTTTTTC ATAATATGTT CTTTGACCAA 
    CTCATCCTCT TCTAAAAGTG TATTCTCATC TTGTGGNGAA GGTGATTACA 
    TGTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7333292 [Map]; Strand: c
      • AT5G22110.1 - [+] show detail - DNA polymerase epsilon subunit B2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 52-0538-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCTCAG 
    ACTGGATTGA AGATATCTAC TAGACATAAC ACAGTACAAA CTCCTTAGTT 
    TAGTTTTGAA CACAAAAATA ACCCAAAAGA AAAATGAGAA CAACCACATT 
    TGACAGAAAA CGTAGACCAA CCTCATTGTT CTCAAACTGC GACATTTCAG 
    CATCAAATGC TGGCCTAGAA AAATGCTCTG CACGAGAAAC TCTCTGCGAC 
    AACAACATGA ATCGTTCCCT GTATAAAGCT GTTTTTGCAG AAGCCTCACC 
    GTGAATAGGC AAGCTACTCG TATGCCTAGT ATCAATTAAA ATTTACTTCA 
    ATCAGTCCAA TTCTACAATC AACAACGCGC AAACGACCAT TACAATTCAT 
    CACTATAAAG TTCCATCATC TACCACACAT AAACCCTAAG CCACCTATCA 
    AACTCGTCTC TAGAAACTCA CTAGACACAC TCTTAGTAGG AAAATTAGAG 
    TGGACTTACT CGTTGAACTT TTTTTTAACA GAATCATATC CAAACTTTTG 
    GCACCAGAAA CGCGTCGATG ATCGCCAAGG AAGAAGCAGA TGTTGTAGGT 
    TCCTCCGGGG CGTTATGAGC TCCTAACAAG CGATTTATCA ATCCTCGAAC 
    TGATTCCGCG TCGACAGTGG ATGATTTATC TGCAACATTT TTTACAAAAT 
    ACCCAACGAC TTCAGAATCG ATGTCAAATT ACGCAGAATA ATACGAGAGA 
    GAAACGAATT GGGCGGCATA CGCGT

AT5G22110.1

Model type
Protein coding
Short Description
DNA polymerase epsilon subunit B2
Curator Summary
Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.
Computational Description
DNA polymerase epsilon subunit B2 (DPB2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, DNA-dependent DNA replication; LOCATED IN: epsilon DNA polymerase complex, nucleus; EXPRESSED IN: embryo, male gametophyte, apical meristem, female gametophyte; CONTAINS InterPro DOMAIN/s: DNA polymerase epsilon, subunit B (InterPro:IPR016266), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 412 Blast hits to 394 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 144; Plants - 62; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR