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52-0540-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5497793 [Map]; Strand: w
      • AT5G16730.1 - [+] show detail - Plant protein of unknown function (DUF827)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0540-1 - 5-prime edge 
    TATATCATTC TCCGTTACTT CGATCCCACC GATTCGAATC ATTCTCTCTC 
    TCTTTCTTGA TCTGAAAATT GAGTCCCAAT TCCAGCAAAA TTATCAATCG 
    AATTTCTGAT CAACTTGAGC GCGACNGGTG GTGGCNGACG GTGGTGGCGA 
    CGGTGACAGC GATCGACGGT TATGGCTTCG AAGACTAAGT AAGACTCTTT 
    ACTCAGTTTC ACTCTGTTTT AGTTTTATCC TATTTTCTCT GGGAAATTTT 
    TTAGTAGATC GTAGTAGATC TGATCCAAGT TACTATTTTG AGAAATTGTC 
    AATGATCGAG TTTTGGATCT ACTAAATTCA TTTCTACATT TGTTTTGTCC 
    TAATTTTTTG CGGCAATTTA TTTCTTTGTT CTGAGATCGA CTGTTGTTAT 
    TGTCTTTTGT TGGAAACAGA ACTAGTTTGT CCGAAACAAC AACTACTACT 
    ACTCCTACCG GGAAATCATC TCCAGCAACT CCAAGAATAG CAAAAAGAAC 
    AGTTAATAAA TCCGAAACTA GTAATAATAA TTCTCCATCT ACTACTACTC 
    CACATTCACG TCTTTCTCTT GATCGTTCTT CTCCAAATTC CAAATCTTCT 
    GTTGAGAGAC GATCACCAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5497677 [Map]; Strand: w
      • AT5G16730.1 - [+] show detail - Plant protein of unknown function (DUF827)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0540-1 - 3-prime edge 
    ATGATATAGA TAATGGCAGG TGTGGTTGTC TCCAGAGTGG CCTCACTAAC 
    TCGTTAAAAA GAAGCT

AT5G16730.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF827)
Computational Description
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545), Spectrin/alpha-actinin (InterPro:IPR018159); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT3G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR