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52-0549-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 286149 [Map]; Strand: c
      • AT3G01790.2 - [+] show detail - Ribosomal protein L13 family protein
        Distance: -371; Region: promoter
      • AT3G01790.1 - [+] show detail - Ribosomal protein L13 family protein
        Distance: -389; Region: promoter
      • AT3G01800.1 - [+] show detail - Ribosome recycling factor
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0549-1 - 3-prime edge 
    GCCTCTATCT AGTCGTAACG CGATTGGGTT TCTTAGAAGA AGCTCCGTTG 
    TTGTTCAATC TCGTGATTTC TCCGTCATTT CTTCACCCAA TCTCATGATG 
    ATGGGAGGCC GAGATCTGCA ATTCGATTTG TCCATGCCCG ATTTCCTTAG 
    AGATTCTCGT CGAGGCTTTG CAAAAGGCAA AAAATCAAGT ATGTTGTTTA 
    TTCCTCATTT CCATTTATCA ATCACTCGCT CGTGCTGATA GATTCTTCTT 
    GTACTAGATC AAAGAGTTGT TGTTTTTTGT TGTTGTTGTT GTATGAACAA 
    CGGCATTTCT GCCTTCTTCT TCTTCTTCAG AGGACGATTC AGGAACAGGG 
    ATGGTCGACG CAGCTCCAGA TATCGGACCT ACCGTGAAAG CAGCAGCCTC 
    TTCTCAAATG GAGGCAGCCA TTGATGCATT GTCCCGGGAT TTAACTAAAT 
    TAAGAACTGG AAGAGCCGCT CCAGGTACTT ATCACCTCTT TCTTTCGGGT 
    TTAGGTTAAG CCTCTCTCTC TCTGTGTGTG CTTATTGTGT GCATTTGCAG 
    GAATGCTTGA TCATATTGTT GTTGAAACGG GAGGAGTAAA GATGCCACTC 
    AATCACTTAG CTTTGGTCTC TGTCTTGGAT C

AT3G01790.1

Model type
Protein coding
Short Description
Ribosomal protein L13 family protein
Computational Description
Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT1G78630.1); Has 7701 Blast hits to 7701 proteins in 2675 species: Archae - 7; Bacteria - 5222; Metazoa - 123; Fungi - 136; Plants - 125; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01790.2

Model type
Protein coding
Short Description
Ribosomal protein L13 family protein
Computational Description
Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT1G78630.1); Has 7701 Blast hits to 7701 proteins in 2675 species: Archae - 7; Bacteria - 5222; Metazoa - 123; Fungi - 136; Plants - 125; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01800.1

Model type
Protein coding
Short Description
Ribosome recycling factor
Computational Description
Ribosome recycling factor; INVOLVED IN: translational termination, translation; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: ribosome recycling factor, chloroplast precursor (TAIR:AT3G63190.1); Has 7776 Blast hits to 7776 proteins in 2635 species: Archae - 0; Bacteria - 5288; Metazoa - 113; Fungi - 65; Plants - 94; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).
Link
InterPro Scan - TAIR