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52-0551-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5934857 [Map]; Strand: c
      • AT5G17920.1 - [+] show detail - Cobalamin-independent synthase family protein
        Distance: -181; Region: promoter
      • AT5G17920.2 - [+] show detail - Cobalamin-independent synthase family protein
        Distance: -417; Region: promoter
    Flanking Genome Sequence: 52-0551-1 - 5-prime edge 
    CTTGGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTATGT GTGCATTAGT AGAGCTAACA AGTAAGAAAT 
    ATAATTAAAG TATCATGTTG GTAAATTAAA AAAAAATCTG AATTAATATT 
    GCCATCTTTT ATAGGAAAAT TAAATTACCA GATGCCCCCT AAGTAAATTT 
    TTTAAGGAAT TTTTGTTGGG TATGTATTTT TAGCTTGAAT TTTGTTTTTT 
    TTTAATTTAT GAATGANATC TTGATTAATT GACGAAAATA TCTGANCACA 
    AAGGTTTTTC AAAAAAAAGT NGGANATTNC AAATGAATAA TTAANGGTTA 
    ATATTATTAA GGTTGAAATC ATTTAATTAA CTTATAATAA AAGTNTNTTA 
    ANANATTAAA ACGTGAAGGG GAGTTGGNGT NCGTGGGGAN ATTAGNGGGN 
    GGCAATGGGA CCCACTGAGG TTGGNGGANA TTCACAATTT GATTNTTTCC 
    ACAGTAAGGT TTTNTTNTAT TATTGATACN ACCCCGTTTC AAGNGTCANC 
    NCGAAAGAGT TTCAAAATCA AGGCCTGTTC CATAGCGTTT TGGAAACAAA 
    TCGGATTATT TACAGGGAAC AATACTCCAA ATTTCAATGA TACAACTCTT 
    TCAGTTAAAT ATAGAAAGTC NAATAGTTGT CAAATATATA TGTATATATA 
    GAAAGTTGAA TATCTGGTAA CACAATTTTA CTTGAACAGG TAACAATCTT 
    GTCTGGCCAT TANTACACTT GGGTAAGTCG GATAAAACCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5934865 [Map]; Strand: c
      • AT5G17920.1 - [+] show detail - Cobalamin-independent synthase family protein
        Distance: -173; Region: promoter
      • AT5G17920.2 - [+] show detail - Cobalamin-independent synthase family protein
        Distance: -409; Region: promoter
    Flanking Genome Sequence: 52-0551-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTGCTTATTT CGACGACTAA AAGAAAAATA CTGAACTCAA ACAATAGAGA 
    AAAAAAGAAA TAATCCTACT CAACTATGTT GAAAAATAAC ATCAAATTCA 
    GAGAAAATGC ACAAACACCA ATAATATAAA TAAATAGGGA TATTTAAAAT 
    AATAATTAAA ATTGCGAAAA TATCGAGCAC CACCAGATCT ACAGAAATGA 
    CACAGAGCCC AACGAAGATG TATCTCGTTT ATTTTCGCTA TAAATAAACT 
    CACACAGCCC ACTCTTCTTC CTCGCTCTCT CTTTCGCCTT CTCTTAGCCT 
    ACCCTTTTTC CTTCTTCCTC TCCGATTCTT CCTCCGTCAG GTTCGTCTCC 
    GACTTTCTAT GTCTTCCTTA CGTCTCTCTT ATTTAGCTCC CTTTCCTTCC 
    TTCTCCACGT TATTATCACC ACTTGTGTTA GTGTGATTCG TTTCATTCTC 
    GTTTTTTTAT ATTCCTCGAT CTGTTTGCTC ATTTGTTGAG ATCTATTCGC 
    TATGTGAGTT CATTTGACTC AGATCTGGAT ATATCGTGTT GTTCGATTTA 
    TAGATCTGGT TTCTGGATCT GTTTACGATC TATCGTCATC TTTCCTTTGA 
    AAATGATTGG TGTTTCTGTG TTCGTATTCG TTTAGATCTA AAGTTTTTGA 
    TCGATGAATG TCGCATGTGT TTTTATCTGA AAGTTTTCGA TTACAGTATC 
    AAGTAGTAGT AGTAGACTCA AAAAGCTGCA TAAACT

AT5G17920.1

Model type
Protein coding
Short Description
Cobalamin-independent synthase family protein
Curator Summary
Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.
Computational Description
ATMS1; FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, copper ion binding, methionine synthase activity; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress, methionine biosynthetic process; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: methionine synthase 2 (TAIR:AT3G03780.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17920.2

Model type
Protein coding
Short Description
Cobalamin-independent synthase family protein
Curator Summary
Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.
Computational Description
COBALAMIN-INDEPENDENT METHIONINE SYNTHASE (ATCIMS); FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: response to zinc ion, response to salt stress, methionine biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: methionine synthase 2 (TAIR:AT3G03780.3); Has 4442 Blast hits to 4434 proteins in 1682 species: Archae - 183; Bacteria - 3246; Metazoa - 14; Fungi - 206; Plants - 251; Viruses - 2; Other Eukaryotes - 540 (source: NCBI BLink).
Link
InterPro Scan - TAIR