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52-0559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269474 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0559-1 - 5-prime edge 
    CTTCCATTAA CTTAGCTTGA TCAGAGATAT TCGCGTATAT GTATTTACGC 
    AGACCTTTGC TACACATCAA CTCACACATA CGTCCCCCCT CCGGTTTATT 
    CGACGTCTCC GGTACAATCT CCTGAGACGG TTGGCTCACA GTGACGGTGG 
    TTTCTACAGA TACATTGTTC CGCGGAGGCG ATAACATCGG CTGATGGAAA 
    TTATTGTTCC GCGCGGCGAG GACAACGCCG TTACTCTCGA GTTTGGAATC 
    AATTGCGTTT TCGATTGACT CGATGTGCTT CTGAATATCA TCGAATTGGC 
    GTTTGAATGT TTCCACTGCA ACTGAAAACG CAGCTAATTC GTCTATGGAT 
    TTCAAAAATT GAGGCTGCTT AGATTGACCG ATCGTAATGT CCATACTTGT 
    AGACTCTGTT TCGACAATCT TCGGTAATTC TCTTCGTCGC TGTTCAGATT 
    GATGTAAACT TGTAGATTAA TGTCCATACT TGTAGACTTT GTATTTGATT 
    AATGAAAACA TAGTTAGGTT GCATGATTAC GACATGTAAT ATATTGTTTT 
    AAATAGTCAC TAAAGCAGTG GTTTATAACA TGTCTAATCA CAAATAACGG 
    TTCTTGCTCG GTAATATGAA CCCAAAAGTT ACTGTCTTAC TCTACCTGCA 
    CTAATGGGGG TGATGGTGTG CTCTTTTTAG TCTTCAAACA CGATAATCCC 
    ATGATAAAAT CCTTGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269590 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0559-1 - 3-prime edge 
    AATGGAAGAG ATTCCTTCAG CTTTGAAATT GGCCAAGGAG CCAGCGAAGT 
    TTGTATTGGA TTGTATTGGC AAGTTTTACT TACAAGGGCG TAGAGCATTT 
    ACTAAAGAGT CGCCTATGAG CTCTGCGAGA CAAGTTTCGC TTCTTATACT 
    TGGAGTCTTT TCTTCTAATG CCTGATCGTG GTAAAGGGAA GGTGAAGATT 
    GAGAGTTGGA TTAAAGATGA GGCGGAGACG GCTGCTGTTG CTTGGAGGAA 
    AAGGTTGATG ACTGAAGGAG GATTAGCTGC GGCTGAGAAA ATGGATGCAA 
    GGGGTTTGCT TTTACTAGTT GCTTGTTTTG GTGTTCCTTC AAACTTTAGG 
    AGTACAGATT TGCTGGATTT GATAAGGATG AGTGGTTCGA ATGAGATTGC 
    CGGTGCTTTG AAGCGGTCAC AGTTTCTTGT CCCTATGGTC TCAGGTACCA 
    TATTCTGTTC TCACTCGGTG AATTTCATTG CAAAGGTGGT TCCTTTTGTT 
    GACATCATCG ACCAACATCA AGTTCCATCT TTGTTTTTCG ATAAGCT

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR