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52-0565-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7499904 [Map]; Strand: w
      • AT3G21320.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein ...
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-0565-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GACCAGACCG TCTGAATCAG TTATTACAGG 
    AACTAACCAT TGGTTTCCAG GAGGAGGAAG TAGCTGTTGT GGCCAAATAG 
    GAGTCACGAG TTCTTTGCTT ATGGAAGGTA GAGGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7499897 [Map]; Strand: w
      • AT3G21320.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein ...
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-0565-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    AAACCATTTC CAGGACCATG TCCTCCTTCT TCTTCAGCCT TCATGGTTCC 
    AGTTTATGGC CAAGATTCAC TCGAGACACC ATTCAGGTTC CCTGTTTCTT 
    CTCCATTCAG CCACAGCTAC TTCCCACCTC CTAACGCNGA GGACAACAGT 
    TGACCAAACA AACCCGTTTG GTCAGTTTCA AAGATGGTCT AACACATCAA 
    GCCACATGAC ACAAGCCATT CCATTTTCTT TAAAGAAGTC TCAGGAATCT 
    AATGACAGTG ACATACATGG AAGCACAGCT TCAAGTCCAC CAGAGAAGCA 
    TAAACTTGAA GTGCTTCCTC TGTTTCCTAC AGAGCCTACC CATCAAACTG 
    ATGAGTACAA GCAGAAACAG CAACCGATGC TTCGCGCCAT TAAAGCCGTT 
    CCTCATAATT CAACATCTGC CTCTGAATCT GCTGCAAGGA TCTTCCGTTT 
    CATTCAGGAA GAAAGGAGGG ACTCAGATCA TATGATTAGT TAGTTCTTTT 
    ATATTTGAAA CCCTTCCACA TTCTTTTGCT CTCATTGCTT CTTCATCTAG 
    CTTAGATTTT CAGTATATTC TATTTACTCT TCTTATGAAG ATGTAAATCA 
    AATACTATCA CTATACATTA AACATACACA CACTTATACA CACATCTTAC 
    ATTGTTCTTG TATTGACAAA CAGCTAATAA AAGATAGACT TTTGTGCTTC 
    TATTNCAGTT TTGAGGAGTT TAAACATTGG AACAAGAAGA

AT3G21320.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G25930.1); Has 63 Blast hits to 58 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR