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52-0566-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10393668 [Map]; Strand: c
      • AT5G28463.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 12695; Region: intergenic
      • AT5G28465.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 3714; Region: intergenic
    Flanking Genome Sequence: 52-0566-1 - 5-prime edge 
    CNNGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCAGTAC ATCCCATACC TTCCAAAATT TTAACATGGT 
    TCATATTTTT TTTTGAAATT CATTCTATTC CTTGTTAGTA AATTTTTTCG 
    TCAACCTCGT CAAGAGGTAG CTTACGGTCA AGTCAATAAA CTCTTCTTTN 
    GAATTTTATT TTTGCTCTAT ATNGTTTTCT ATTATTCTGA TAAAAAGTTT 
    TAACTTCTAA ATNGGTTCTT AACTCTATCA CTTCTCTCCT TTGATGTTGC 
    AGTTGANATT CTCTTCACCT TCACGCTTCC CAAACTAAAA GACCTCATCT 
    TATATATTNG GAACTTGATT CAAATNGATA CGATCAAGAA CACCACCATC 
    AAACCATGAC CTTGTTGCTT TAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9161175 [Map]; Strand: w
      • AT5G26210.1 - [+] show detail - alfin-like 4
        Distance: -792; Region: promoter
    Flanking Genome Sequence: 52-0566-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    TACTTATTAA AAAAACGAAA AGACCTTGAA AAAGAGAAGA GGTTGAACTT 
    ATTTATCAGA CACTATATTA CCGAAAATTT GGCGCGAAAA AGGTATATAG 
    TAACTAGTAA GATCATTTAA AAGTTCTCAT TAATCAAAAC CAGACTATTA 
    TTACTCTTTT GAAAAAAGAC TACACCTCGA GTGAAGAAAT AAAATTAACG 
    GTCAAACTTA TTTCTCAGAT AGCAGAATAC CAAAAATTGG CGCGAAAGAC 
    AAAACGAGAC CAAAAAAAGT AGAACAAAGT CAAACTTATT TCTTAAATAT 
    CAGATTACCG AAATTTGAAG CGAAAAACTG AGTATTTGAT AAACATTTAC 
    CGAAACCTCT CACTAATCTA AAATAAAGTA TCTATCCCTT ACTATGTTCA 
    AAAAGAGCGC GAATGAAAAA CATAGAAAAC GGTCAAATTT ATTTCTGAGT 
    TACCAGATTA CCAAACATTT ACCGCGAAAA ACAGATCAAC GGTCAAATTT 
    ATTTCGCTGA TTCCAGATTA CCGAACATTT GCTTCGAGAA AACAGAGTAT 
    CTAATAAAAC TTTCTGAAAT CTCTTAGCAA TCTTACAACC ATTACAATTT 
    AATGTATCAT TAACACAAAA CTCTTAATTT CAAGCT

AT5G26210.1

Model type
Protein coding
Short Description
alfin-like 4
Curator Summary
AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
alfin-like 4 (AL4); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 3 (TAIR:AT3G42790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28463.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28465.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR