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52-0593-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 12574593 [Map]; Strand: c
      • AT3G30835.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -2661; Region: intergenic
      • AT3G30839.1 - [+] show detail - transposable element gene
        Distance: -1038; Region: intergenic
    Flanking Genome Sequence: 52-0593-1 - 5-prime edge 
    CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCG AGTCAAAGCC CTTTCCCAAT TACATCCCAT 
    TTTTCGAGAT GACAAGCTTC TCCGCATCAT TCTTATCAAG AGAATCCCAC 
    CGCTCCTTAG AGGTCTTGAC ATTAGAGTAC ACATAGTACA GCGGATCGGA 
    GAGGCNGGCT TTGGATATAT ACTTTACACA GGAAATCACC GTGTTCCCAC 
    GCATGAACGC TCGCAAGCGC ACGAGGGTCC GTGTTGTCCG CTGGGAGGAT 
    CGGTTTCTCT TCATGCGTGT ACTGGCTCAG CTTCAGTGTT CTCAAGTAGA 
    ACAACATCTT TTTCTGCCAT ATCTTAAATG AGCTCCCATC GAACTTGTCG 
    GGAAGGAGGC CTGCCGAATT TGCCGCTGGA AGCTGAAATT GCTCAGGGGC 
    TGCAGTTTGC ACACGTTCAG GTGTCGCTAC TTTCACTAGA GTGAGAGTAC 
    CAAACTGAAT TTCAACTTCA CTTTCACCCC CACAGTTGGT GACCTCATCG 
    ACGTTTGAGA CGTTGACGTT CTCAGTTGAC ATGTCTGAAA ATAAACCACA 
    AAACTAGATT AGTGTCGTGA GTTGATCAAG AGTTACACTT GATTAATGTT 
    TTCAATTTTG CAGACAAGCA ANACCAAGTT GCAGGTTTCG CAAAACCAAA 
    CTGGTTCACG TGAAAAATGA TTAAAGAGAC ACTAAGTCTC GATGTCTTAN 
    TGCTANAATT GGTTCAACAA TCTAACCACT TTATTTCAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 12368256 [Map]; Strand: c
      • AT3G30740.1 - [+] show detail - 40S ribosomal protein S25 (RPS25C), pseudogene, similar to GB:P46301 GI:11732...
        Distance: 138; Region: intergenic
      • AT3G30742.1 - [+] show detail - transposable element gene
        Distance: 3090; Region: intergenic
    Flanking Genome Sequence: 52-0593-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    GGATGTAATT GGGAAAGGGC TTTGTTAGTG ATGGTCTCTT TAAGATGTCC 
    GTTGAATCTG TTATTCGCAA TTAGATGTAA CCAAGGCTTT GACCTTGAAG 
    AAGAATAAGA CTAAGTTGTG ACATTCGTCC CAATTAATAA AGATTCAGTT 
    CTTTTCTTTT ATTGGATTTG AGTCTTTCAC ATTTGACATT GATGTTTCAA 
    GATGTTTAGA GATTGATTCA TTTGAACTTA TTCTGAAATA ATTGTAGAGA 
    CCTGCAATTA TGTTTGTTTT TTCAGAAAAA TGTGATTTCT CAGAAATTGT 
    GGTTGAGACT CATTATTTTT TGGTTCGTTG CTTTATATGA GATTTTAAAG 
    CATCAACGAT TAGAACCTGC AGTTTATCTC GGTAGAAAAA CTTGAAATTC 
    AGTTCAGAGT TAGTGATAGA ACCTGCAATT CTTTTTGCAA AATATAAACG 
    ATCATTTTAA AGTGCTTGGA TAGTAGTAGT GATTTAATAC TGCATCAAGA 
    CCCATTGGTT CGGTTTAATA TTCTGCAAAT TTGAAATATT ATATGTTAAA 
    CCTGCAGTTT TGGTTTGTGT AAGACCTGCA GCGTTTTTTT TTTTNNCCAN 
    CANTNGGNTT AAAGNAANNC AATTGTTTNT AGCCAANNTT GNNCCCNGGN 
    AAATTTAAAA CNGNTTGTTN GNCTTNTNGG CNAANANTTT NAATCANGTT 
    TTAACCNGCT TTTTNTNCCC TNGTTTNNTN AAAAA

AT3G30740.1

Model type
Pseudogene
Computational Description
40S ribosomal protein S25 (RPS25C), pseudogene, similar to GB:P46301 GI:1173234 40S RIBOSOMAL PROTEIN S25 from (Lycopersicon esculentum); blastp match of 75% identity and 7.2e-09 P-value to SP|P46301|RS25_LYCES 40S ribosomal protein S25. (Tomato) {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT3G30742.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative non-LTR retroelement reverse transcriptase, similar to GB:S65812 from (Arabidopsis thaliana); blastp match of 25% identity and 4.4e-25 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT3G30835.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G30839.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.2e-11 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR