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52-0595-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3401000 [Map]; Strand: c
      • AT3G10860.1 - [+] show detail - Cytochrome b-c1 complex, subunit 8 protein
        Distance: 259; Region: intergenic
      • AT3G10870.1 - [+] show detail - methyl esterase 17
        Distance: 78; Region: intergenic
    Flanking Genome Sequence: 52-0595-1 - 5-prime edge
    GTGATAAACT AACAAAATCG GTTATACTGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA GGCCAAGGTC TACTTAAAGT CCTAGCCGGT
    ATCGACACCA ACTTCACAGT TACCTCAAAA GCCTTAGACG AAGAGAATGA
    CTCCGCTGAA CTGTACTTGA TGAAATGGAC AACATTTCTA GTCCAACCAA
    CGACTCTGTT CATCACAAAC CTTGTAGGAG TGGTTGCAGA CTTGCAGTGT
    TTGATTTTGC CTAATAGTTG TTTGTAGTTG ATGTCTTAAG GGAACATAGG
    CAGCGTTTGA TTTTGCCTAA TAGTTGTTTT GAGGGATCAA TATATTACTC
    GATTCAATCC AATTTTCATA CCATATATCA AGAAAGATGA ACAACAAGAG
    TCATTGTCAT GAAACCCAAA CATTTATTTA GCAAAAGAGT TTCAGAAAAA
    CTGACTCAGA AGATTCCCAC AAGAGTTTTT GTGAAATTTA TAGGCTTGAA
    ACAAAAGAAA TTACTTCAAA CTGTCAGGTT CTTGTAGAAA AGGAGTGACT
    TCATGCTTCA GAATCTGTGC TCAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13590507 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6533; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11293; Region: intergenic
    2. Chromosome: 3; Position: 13591219 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7245; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10581; Region: intergenic
    3. Chromosome: 3; Position: 13592465 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8491; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9335; Region: intergenic
    Flanking Genome Sequence: 52-0595-1 - 3-prime edge
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATGT 
    GACATGACAT CAAGTCATAT TTGACTCCAA AACACTAACC AACCTTCCCT
    TTGCCTTTCA AAGCT

AT3G10860.1

Model type
Protein coding
Short Description
Cytochrome b-c1 complex, subunit 8 protein
Computational Description
Cytochrome b-c1 complex, subunit 8 protein; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b-c1 complex, subunit 8 (InterPro:IPR020101); BEST Arabidopsis thaliana protein match is: Cytochrome b-c1 complex, subunit 8 protein (TAIR:AT5G05370.1); Has 67 Blast hits to 67 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10870.1

Model type
Protein coding
Short Description
methyl esterase 17
Curator Summary
Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem.
Computational Description
methyl esterase 17 (MES17); CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: methyl esterase 18 (TAIR:AT5G58310.1); Has 1383 Blast hits to 1383 proteins in 290 species: Archae - 0; Bacteria - 591; Metazoa - 1; Fungi - 15; Plants - 599; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR