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Mutant Lines
52-0600-1

52-0600-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 23438241 [Map]; Strand: c
  - AT3G63460.3 - [+] show detail - transducin family protein / WD-40 repeat family protein
    Distance: -867; Region: promoter
  - AT3G63460.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
    Distance: -897; Region: promoter
  - AT3G63460.2 - [+] show detail - transducin family protein / WD-40 repeat family protein
    Distance: -897; Region: promoter
  - AT3G63470.1 - [+] show detail - serine carboxypeptidase-like 40
    Distance: -233; Region: promoter
Flanking Genome Sequence: 52-0600-1 - 5-prime edge
```
GTGATAAACT AACAAAATCG GTTATACTGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCA ATATGTTTCA TGTAAGAAAA GGTTGTGTGT 
CTATGGGTGT GAAGTGAACT TACTAAATTA AATTAGTAAT CTTCGAATGT 
ATATGGCCTT CGATTATTAT TAGTCGTTTG GGAGAGAAAA ACGAAACACC 
TTGATAGCAA CNTTATAACT TATAAGTAGA ATGATGCAAT GATTATTGGT 
TTTTAATAAT TATTTCTCTT TTTTTTCCCA AAACAAAAGT TAAAGAAGCA 
TAAAATGCAT TACCCTGATA AAAATGTACA AGTGGAATT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 23438412 [Map]; Strand: c
- AT3G63470.1 - [+] show detail - serine carboxypeptidase-like 40
  Distance: -62; Region: promoter

ANTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATG 
ATNNANNGAA TAAGNTGNTN NAAGATNCAC AACCCACACA CTNNNCTNTT 
CTTTGACTTG TNTANNTTNC AAAACCNGNC CNAAAACCAN ANCCAGCAAC 
CAAAACCTTC TATTGTTTCC CTCCCACGCT ATAATTCATA GACATAAGAG 
AATGAGGAAA GGACAGGGCT ACTCCTACTC TGTAATCGCA TCGGTGTTGG 
TGTTACTGTG TGTGGTGGTG TCTCGAATCG AATGCAGCAG CCAAGTGCAC 
GCCCTGAGCC GTCTTTACCT GTCTAAGCGA GGGGTTGGTG GTTCGTCCAC 
CATGGACACA AGCCATTTCA AGGCGGTTAA GGATTTGAAA CCGTCTTCGC 
TGCGGAGTGC TGCTAATCAG GAGGGGTTAA GAAAGAGAGA TCTGATACGG 
AGATTGCCCG GACAGCCTCC CGTTAGTTTC GATCAGTACG GCGGCTATGT 
TACCGTCAAC GAATCCGCCG GGCGTTCCTT TTTCTACTAT TTCGTGGAAG 
CCTCTAAGTC TAAAGATTCT TCTCCTCTGC TTCTCTGGCT CAACGGCGGT 
ACGTTTCCAC TGTCCACACG CATACGTATA TATATTTCTT TTATCTTGGT 
TTGCATCTTT AGTTAGGGGC ACTGCATTAT GGGTTTATAT CTGTACATCT 
TATATCTGAG TACAAAGATG AACAAGAATG TTAGTTTGAT CGATCGANGC 
TGNCTTTTTC TCANTGCTTA TTAATCTATC ATATGCTAT

AT3G63460.1

Model type: Protein coding
Short Description: transducin family protein / WD-40 repeat family protein
Computational Description: transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36264 Blast hits to 25632 proteins in 1258 species: Archae - 42; Bacteria - 5004; Metazoa - 13161; Fungi - 7258; Plants - 4512; Viruses - 551; Other Eukaryotes - 5736 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63460.2

Model type: Protein coding
Short Description: transducin family protein / WD-40 repeat family protein
Computational Description: transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36280 Blast hits to 25623 proteins in 1259 species: Archae - 42; Bacteria - 4996; Metazoa - 13160; Fungi - 7289; Plants - 4519; Viruses - 551; Other Eukaryotes - 5723 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63460.3

Model type: Protein coding
Short Description: transducin family protein / WD-40 repeat family protein
Computational Description: transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1).
Link: InterPro Scan - TAIR

AT3G63470.1

Model type: Protein coding
Short Description: serine carboxypeptidase-like 40
Computational Description: serine carboxypeptidase-like 40 (scpl40); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 39 (TAIR:AT3G52020.1); Has 3527 Blast hits to 3467 proteins in 341 species: Archae - 0; Bacteria - 144; Metazoa - 641; Fungi - 871; Plants - 1469; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).
Link: InterPro Scan - TAIR