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52-0601-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24536339 [Map]; Strand: c
      • AT1G65920.1 - [+] show detail - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
        Distance: -7045; Region: intergenic
      • AT1G65930.1 - [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
        Distance: -2547; Region: intergenic
    Flanking Genome Sequence: 52-0601-1 - 5-prime edge 
    ATAACACCTA ACAAAGAACA TGGCCTTGTG ACTTGTGTGT ATGTTTCTTA 
    GTCTAAAGGG AACACTATAT GAACAATGCA TACCCTACTT TTGCCCATCT 
    TTATACAAAA AAAATCCTCT CCCACGTATA ATTTTTAGCG GTCACATAAA 
    TGATTTTATC TAATTTATTG TAAGGGTCCT ACTAAACTAG TAAGCCCCGA 
    TCAAATGAAT CTTTAACTAT TACGTATTCA TTTATTTGAC ATTTGCGACA 
    CAATATTCTC ACTGACACCT GTTACTTACA TTTCAAAGTG GTTGACAGTT 
    ACGTCTACAT TGAAATATTG TTGAAACTTG AGATAGATAA AATTTGGAAA 
    TTTGGGTGGC CAAAACATTT ATGTTTTCTT TAGTTTTAAA GAACAGCTGT 
    TTGTAAATCT ACAAAGGTCG GTGAGAAATA ATACTAATCT ACAAAAAAAA 
    AATTAAATGT GAAAAAAAAN NAGNNTNCTN TTNNGTGNAA CTANANAANA 
    CNAANNNNNG NAAAATNANA TGNNNACNNN NNGNCNAAAA ANNGGGCNNA 
    NNNTTTTTAN TTTNAAAAAA AAANNNNNAN NTAAAANANN NGGNNGNNGN 
    NNNTNNGGNG G

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24536455 [Map]; Strand: c
      • AT1G65920.1 - [+] show detail - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
        Distance: -7161; Region: intergenic
      • AT1G65930.1 - [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
        Distance: -2431; Region: intergenic
    Flanking Genome Sequence: 52-0601-1 - 3-prime edge 
    GGTGTTATAT TATCCGAGGA TGTGAAAATA CGAGATGTCG GGATTTATAA 
    TTCCCCTAAT GAATCCAAAA CTTTATGTAT AGTTTACTGT TCGGAGTTTA 
    TTGAATGTCG TATTTATCTA ATTTTCTGAA CCAATTCTTA ACGAATCCAA 
    ACGTATACCT TATAACCAAT ACGGTCCACA TGTCGTTTAG GTTACTACAT 
    TATTAGAACG TAACTTACAC AAAGAAAATC GAAAACAAAA AAGAAACTTG 
    CATGATTACG AAGTTGGCAG TGAATT

AT1G65920.1

Model type
Protein coding
Short Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Computational Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G42140.1); Has 20784 Blast hits to 8293 proteins in 486 species: Archae - 65; Bacteria - 2335; Metazoa - 8187; Fungi - 1149; Plants - 2727; Viruses - 3; Other Eukaryotes - 6318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65930.1

Model type
Protein coding
Short Description
cytosolic NADP+-dependent isocitrate dehydrogenase
Curator Summary
Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.
Computational Description
cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink).
Link
InterPro Scan - TAIR