Home
Mutant Lines
52-0602-1

52-0602-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 6445979 [Map]; Strand: c
- AT1G18700.3 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
  Distance: 2933; Region: intergenic
- AT1G18710.1 - [+] show detail - myb domain protein 47
  Distance: -4615; Region: intergenic

ATAAAAACGT ATGTACATAA CGAAAACAAA AGAAAAAGTA TCGATTTCAA 
GATGTCAAAC TCCTAAAATT TACGTGAGCT AACCTAAGTC AGTGGCTCGA 
AGGGCCAAAT TAATCTGCAA TCAAAGCCAT GGAATGTTGT CGAACACAAA 
GATATGAATT GGCCAAAAGA GTTTTCCTTT TTAAAATCGT CATTATATTG 
TTTCAAAGGA GTATAAATTT TATTTTAAAA ATACTATGAA AGTATGAAAG 
AGATGTACAT TTTACAAAAT AAAAATTATA TGTCTCTTTT AATCAGCCAA 
AATTATATAT ATTGCCAATT GCTCTTAAGA AAAAGATATA GTAAAAATAA 
TCTATATCAA AGATAGAAAA GAAAATTAAA ATCTGATGTT AAATATATAA 
TGATGGATAC AACATAGAAT TGTTTCTTTG TGGTAAAAAA GAGTGAGAGA 
GATTGATTAA TGATTACTTT TACGCAAAAA AAAAGAGAGA GTAAAAATAG 
TATGGACCAA TGTAAACTAC AAGAAAACAG TGATATTAGA ACACGAAAAA 
TTGTTGCAAT AAGTCAATAT ATTGTTTGCA AACACGAGAT TGCAATAAAA 
TTTCTTTTTC TACTTTTTCT TCTTCTTGGT CTCAACGNNG CTTCACTCCT 
TTCTTACAAA GATAATAACT TCTCAAAAGC TTTGGTTTTG ATCTTCTACG 
ATGGCTACAA AAAT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 6446095 [Map]; Strand: c
  - AT1G18700.3 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
    Distance: 3049; Region: intergenic
  - AT1G18710.1 - [+] show detail - myb domain protein 47
    Distance: -4499; Region: intergenic
Flanking Genome Sequence: 52-0602-1 - 3-prime edge
```
GTTTTTATCC GTTATTGTTT GTTTTTTATG TAAATTTTTG TTATTTTTCT 
ACTACTTGTA CTTTTTGTAA CGTCCATGAA AACTTTAAAA ATGGTATAAA 
CACTTCACAC TTTAGTAAAA AATAAAAAAA TAATATAAAC AATCATTAAA 
AAAAATACTA ATAAATAATA GATATACCGT GTATGGAGAT GGGAAACGGA 
ATCGTTGGGA TC
```

AT1G18700.3

Model type: Protein coding
Short Description: DNAJ heat shock N-terminal domain-containing protein
Computational Description: DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 369 Blast hits to 369 proteins in 91 species: Archae - 2; Bacteria - 18; Metazoa - 191; Fungi - 18; Plants - 98; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G18710.1

Model type: Protein coding
Short Description: myb domain protein 47
Curator Summary: Member of the R2R3 factor gene family.
Computational Description: myb domain protein 47 (MYB47); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: leaf lamina base, stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 95 (TAIR:AT1G74430.1); Has 8675 Blast hits to 7987 proteins in 483 species: Archae - 0; Bacteria - 0; Metazoa - 776; Fungi - 509; Plants - 5635; Viruses - 3; Other Eukaryotes - 1752 (source: NCBI BLink).
Link: InterPro Scan - TAIR