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52-0607-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11114064 [Map]; Strand: c
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0607-1 - 5-prime edge 
    CNTNAAAAAC TAACAAAATC GGTTATNCGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC AAATGTGCTG TGTGTCGGGC CCGGAGATGA 
    GTTTGTTGTG GAATGGAGAG AGAACAGACT CCTTCAAGCC GTTACGGGGC 
    CTCCGCCAGG GTGATCCCTT ATCTCCGTAT TTGTTTGTGC TATGTATGGA 
    GAGGCNTTTG TCACTTGATT GAGCGATCGA TTGATAACAA ACAGTGGAAG 
    CCCATTAGTT TGTCTCAAGG CGGTCCCAAG TTATCTCATA TCTGTTTTGC 
    TGACGATCTA ATTTTATTTG CGGAGGCTTC AGTAATGCAG ATAAGAGTGA 
    TTCGGAAGGT GCTGGAGACA TTTTGTATAG CCTCTGGTCA AAAGATTAGC 
    CTGGAGAAGT CAAAAATATT TTTTTCAGGG AATGTCTCAC GTGATCTGAG 
    CAAACTGATA AGTGAGGAGA GCGGGATTAA AGCAACAAAA GACTTGGGTA 
    AATATCTTGG GATGCCAGTA CTTCATAAAC GCATCAATAA GGATACTTTC 
    AGTGAACTTT TGGAGAAGGT CTCTTCCCGT TTGTCGGGTT GGAAGGAGAG 
    AACTTTGAGT TTTGCGGGAC GGATGACGCT TACCAAAGCT GTATTATCAT 
    CTATACCGGT CCATACAATG AGTTCTATTG CGCTACCACA ATCGACTATT 
    ACTCGATTGG ACAAAGCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11046116 [Map]; Strand: w
      • AT4G20520.1 - [+] show detail - RNA binding;RNA-directed DNA polymerases
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 4; Position: 11114114 [Map]; Strand: c
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    3. Chromosome: 1; Position: 21452560 [Map]; Strand: c
      • AT1G58020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0607-1 - 3-prime edge 
    ATTATCCATC TTACCCAAAC TTCGGAGAAC CCCGCAGAAA TAAGTGTATC 
    CTCCAGATAA TCCCATCGGA TC

AT1G58020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.7e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G20520.1

Model type
Protein coding
Short Description
RNA binding;RNA-directed DNA polymerases
Computational Description
RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR