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Mutant Lines
52-0615-2

52-0615-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 17899233 [Map]; Strand: w
- AT4G38130.1 - [+] show detail - histone deacetylase 1
  Distance: 0; Region: intron1 (5UTR)
- AT4G38130.2 - [+] show detail - histone deacetylase 1
  Distance: 0; Region: intron1 (5UTR)

ATAAACTAAC AAAATCGGTT ATNCGATAAC GGTCGGTACG GGATTTTCCC 
ATCCTACTTT CATGAAAGAT ATTAAAAGAC GGCGAGGCTA GACAGACGCC 
GGAAAATGGA ATCACGCAGA CAAGGAAGAG AGTCTGACTG ACCTTTTTCG 
TAGGATCAAC GGTGTGTTGT AATCACAGTC GCAGTCAAAT GGTCNGGAGG 
AGAAGCNTGC GATGATCTCT CTCTCTCTCT CTCTCTGGCT TTCTTCTTCC 
TTCCTCCTCG CCGAGGGGAN GGGAGCTGCT CTCTGCTTTG CTTTCAGATT 
TTCTTTCACC TCTGACTGAA ACTGTANCCT ACTTACTCAT CTCTTNCAAC 
TTTTTNTACT TTCATTNTAT AATGGAAAGG CCCACTTTTA ATCTGTANTG 
GTTTAAAATG AGGCCCACTT TTAATGTGTT NTAAAAATAA GGCCTATTAA 
GTTGCCTTTA GCCCGTNTAC TTAATGGTCT NACGCAGAGT NACAAATCNA 
TTAGGAAACA GAGCNCTAGA GCAGCAGTNN GCNCTANGCA NGGCTGGTAA 
AACTAAACTC GCGCTGCTTT TGTCTCTGTT TAGNACAGTA TATCATAAAA 
CTGAGTAATN CACAAAATCT TGATTGAAAA NGAGATGGAG ACNATATGTG 
CTTGGANACT AANACAAAAT ACATGTTANA TAAAGANTGG GTGTGTTNAC 
AANGAAGCTA GGCTACANGT NTNCNAGTAG ATGGAGAAAG ATACANAAAA 
AGAANAAGAT AGAGAGATNC AGGGNGGNAG ANGAG

3 prime edge [+] show sequence

Chromosome: 4; Position: 227283 [Map]; Strand: c
- AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: 0; Region: intron1 (5UTR)
- AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: -88; Region: promoter
- AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
  Distance: -411; Region: promoter
- AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
  Distance: -411; Region: promoter

ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCA 
GTTCAAGTCA ACCATAGTTC GTAAAGACGA AACAATGAAA GAAACTTGTG 
GGCAAGAAGA ATCTACTCAC CAGTCACCAT AGATGCTCGA AAGATTCCAT 
TAGCATCCTC GAGACTAGCG GAGAAAGACG TGCAATGTAG AAATTTCGTC 
TTCGGAAGCN TGTCGGGTCG GGTCGGGTCG GGTCGGATCT GTGCNTGAGT 
GTAGAAGAAA CTTTTGTTTT CTATAGGACA GCGTATTAGG ATTTAGGACC 
AACAAATTTG GGCTTTTAGC TATAGGCCCA TTAAATTTGT CAGCACTGCA 
TCTGAGCGGT GTCCACAGAC TCTATCGTAT ACCCAAGGGT ACTGGATAAT 
TACCTCGTTG CATTTTTTAT TTGTTTGGTC AGCAGATTTT TAGTTGAATG 
ATTGAATTTG CCGGCCAACG TTTCGACAGT CTCTACACCG TCATGAACAC 
TGAATCAGGT AATTCCGATA TCTTTTTTCT TTGTTCTATC GCCGGAGAAA 
TGAAAGAGAT GTTGAACTGA GAGTTTTTCC AAGATTCGGA TGATTTTTCA 
TATGATTGGT TGCTTTGGTT TTGTAGTTGT GGAGTTCCTT GGGAATGTGA 
CCTTGTTGCA GCGATTACCT AGTTCTTCTT TGAAGAGAAT AGCTGAAGTT 
GTTCTCTTCA ACGTTATGGT CAGTGATTCT GGGATTTTGC TTTTGTTCTT 
ATCTTGAAGT CAGTTTGATT GGGAATTTCG TTATGTTT

AT4G00500.1

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00500.2

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00520.2

Model type: Protein coding
Short Description: Acyl-CoA thioesterase family protein
Computational Description: Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00520.3

Model type: Protein coding
Short Description: Acyl-CoA thioesterase family protein
Computational Description: Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38130.1

Model type: Protein coding
Short Description: histone deacetylase 1
Curator Summary: Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.
Computational Description: histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8765 Blast hits to 8554 proteins in 1452 species: Archae - 219; Bacteria - 3185; Metazoa - 1529; Fungi - 558; Plants - 480; Viruses - 0; Other Eukaryotes - 2794 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38130.2

Model type: Protein coding
Short Description: histone deacetylase 1
Curator Summary: Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.
Computational Description: histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink).
Link: InterPro Scan - TAIR