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52-0631-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8522987 [Map]; Strand: c
      • AT5G24810.1 - [+] show detail - ABC1 family protein
        Distance: -220; Region: promoter
      • AT5G24810.2 - [+] show detail - ABC1 family protein
        Distance: -308; Region: promoter
      • AT5G24820.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: -419; Region: promoter
    Flanking Genome Sequence: 52-0631-1 - 5-prime edge 
    CTTTNATAAA ACTAACAAAA TCGGTTATNC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCACT TGGTTACTAA ACGCATCTAC CGTGACAACT 
    GACAAGCATA TATTAGATGA CGTGGCCCAT TGACGATCAC AGTAACTTGG 
    GCTTATTGGG CCCATAACGC GTAAAATAAA AAGCCCAACA GAATCAGAAA 
    AAGAGATGTG TGGGTCCCAT AGGAATCTGC GGTATAGAAT CAATTGCTTC 
    GCGGGGGTTT TACTTTTCGT CTCATCGCAA AAACGCATGA CGCGTTTTTT 
    CTCCGTAGAT CTTTGTCTTC GTCTTCGTCT TTGTCTTTGT AATTCTTACG 
    TTAAGCTCTC TCACCTACCC GAAAGCTGCG AACTTTTCCT AGAAAGCTAA 
    TTCAAACGTA GAATATTCTA ATCCCACCAC TTAATTTTAT AAATGCGGAA 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8525833 [Map]; Strand: c
      • AT5G24820.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 536; Region: intergenic
      • AT5G24825.1 - [+] show detail - MIR169B; miRNA
        Distance: -1636; Region: intergenic
    Flanking Genome Sequence: 52-0631-1 - 3-prime edge 
    AATGAGATAG GGGCGGTGCA TTTGTTGGCG GCGCCACACC TTTTAGGTTC 
    CATTTTTGGT TTTCCATTTA TTTCACATTT AAGATGATAT CTATGTACAT 
    ATGTCTATCT ATAGAAGTTC TCAGGAAAAA ATGTTCTAAA AGAAAAGTCC 
    TTTAATACCT AATTAAGCCA TACTAATACT GTCTAAGTAT AACAACCTTG 
    CAGGTTTATA TCAGTGTTAT TGTGTTACCT ACTAAACATG TACATATATG 
    TTAGGTAGTG GAATCTTCTT TTAAAAAAAT TAAAACTATT TTTGAGATCT 
    ATAACTACAT ATCATCAAGT AATTAACCCA TCGAATCCAC TAATACTAAA 
    CACCGGTTAT GCTATATCCA TTCTTAAATA AGGAAGGTCA CTAGACCCAT 
    ATATAAGCT

AT5G24810.1

Model type
Protein coding
Short Description
ABC1 family protein
Computational Description
ABC1 family protein; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24810.2

Model type
Protein coding
Short Description
ABC1 family protein
Computational Description
ABC1 family protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2).
Link
InterPro Scan - TAIR

AT5G24820.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G35615.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24825.1

Model type
miRNA
Short Description
MIR169B; miRNA
Curator Summary
Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CAGCCAAGGAUGACUUGCCGG
Link
InterPro Scan - TAIR