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52-0649-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13154464 [Map]; Strand: w
      • AT1G35617.1 - [+] show detail - unknown protein; Has 262 Blast hits to 207 proteins in 54 species: Archae - 0...
        Distance: 516; Region: intergenic
      • AT1G35620.1 - [+] show detail - PDI-like 5-2
        Distance: -1904; Region: intergenic
    Flanking Genome Sequence: 52-0649-1 - 5-prime edge 
    NTCAGACGTA GATGTTATTA TAGTATGGAG CAATAACGGG CAGAATAAAC 
    AGCGAGAGAA TCGAAAAAGT ATTTGATGGA ACAATGTTAT GGGTCGAGAT 
    ACATGAATGC TCCTAATGGT TTCTCTAATA ATGCACCTAA TTATTGGACG 
    AATCAACCTC AGCCATAAAA TCAATTGCTC CTCCACCATC AGTGGTGGAG 
    CCATAAATAT ATGTTACGGG GTCATATATT TGACCGTCAC GAAACAAAAT 
    GTTCCCATAA TATTTTATGC TTATTTTTTC CTAAAACACG AAGTACTATT 
    AGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13154384 [Map]; Strand: w
      • AT1G35617.1 - [+] show detail - unknown protein; Has 262 Blast hits to 207 proteins in 54 species: Archae - 0...
        Distance: 436; Region: intergenic
      • AT1G35620.1 - [+] show detail - PDI-like 5-2
        Distance: -1984; Region: intergenic
    Flanking Genome Sequence: 52-0649-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTTTATA 
    GTCTTTTCAA GTACTAGAGA GCTTTCACCT AACATAGCAT TATTATCATA 
    AGATGATTTC ATGATTCCTC TCAATATGTT TTCAAAGCT

AT1G35617.1

Model type
Protein coding
Computational Description
unknown protein; Has 262 Blast hits to 207 proteins in 54 species: Archae - 0; Bacteria - 28; Metazoa - 70; Fungi - 8; Plants - 93; Viruses - 20; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G35620.1

Model type
Protein coding
Short Description
PDI-like 5-2
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
Computational Description
PDI-like 5-2 (PDIL5-2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: PDI-like 1-1 (TAIR:AT1G21750.2); Has 16921 Blast hits to 14897 proteins in 2775 species: Archae - 169; Bacteria - 7975; Metazoa - 3273; Fungi - 1120; Plants - 1363; Viruses - 4; Other Eukaryotes - 3017 (source: NCBI BLink).
Link
InterPro Scan - TAIR