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52-0672-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17201865 [Map]; Strand: c
      • AT2G41250.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0672-1 - 5-prime edge 
    CAGAAGAGCT TATCAGAAAC CATGGGGTGG ATCTCATCTT AGGTATTTAG 
    AATCATCTTC TTTCTCTTTT TGTTTCTTCT ACTCCAAGAA AATCACCACT 
    AGGCAAAATG TTCTTTTGTG GCCTTTCTAT TTGTTTGTAT GACAACTTTT 
    AATACTTGAT CATGATTATG ACTCTAGTGA TGCATCTCTG TACAAAGATA 
    TCTGGTTTAA TACTGACTCT TTCGAATATA CATTTGCTGT GGAATCTCTG 
    TTGGATTCAT AAATGGGTCT GCTTAAGACA TTTACTTCTG TGCTGGTCTT 
    GATTTTTGAT TCTTTGTTTG TAGATATGTA AACGATGCAA GACCTTTCTG 
    GCAGTATATA GTGACTGCAT CAACAGGCTG CTCGGATTCA CAGTACTTTG 
    AAGAGCTTTA CAGCTATTTT ACTACAGAAC AGGTTTGATC TCTACTACTA 
    CTTCTCCATA TGCTTCAGTA ATAGTTTTGG TTCTTTCTCT TGAGATTTCT 
    CCATTTGCTT TCCCAGGCGT GGAAGTTATG TGATCCAGAT GCAGGGAAAG 
    TGTTTAAGGC TATTAAAGAA GCGGGTGTAA AAGTTGCAAT AGTCTCCAAC 
    TTCGATACTC GGTTAAGACC TCTCCTACGT GCATTGAGAT GTGAAGATTG 
    GTTTGATGCT GTAGCTGTTT CAGCAGAAGT AAGATAACCT CTTTTCGTTT 
    ATATCTTTTT GNTGATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17201981 [Map]; Strand: c
      • AT2G41250.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0672-1 - 3-prime edge 
    CTCTTCTGTA TCTAGTAAGT ATCTCAGCCT CCGAGTACTC CACTCCGTAC 
    TTCTCTCCAA TATTCTTATA TATCTACAAA ATCAGAATCC ATAACACATC 
    TTAGAATCTA CACAATAAAA ATCTCTATCT ACTCTTCTAA GAACAAACAG 
    AGATCATAAA AAGCCTAAGA CATTCTTAAC ATAACAATAA GCATCAAATT 
    TTTACTCAGA ATCAAACATG AATCCTCAAA ATGCTCATAG CTTTCTAAAA 
    AATTTCAATC ACAGAGCAAG AAACATGTGA AGCATTTGTT CAACTGTTGA 
    ATCACACAAA GTAACAGAGA AATTTGAGAG ACCTGAGCAG TAGGTTGAGC 
    TGGAACAAGG AGAGTACCAA CAGCATCAAC AAGCAACGCC TTATGAGTGA 
    TCTCACCATA GAGAGATCTT CTATAATCTT CATACTCTTT CAACACACTT 
    CCCAATCCGT AAATCCCACC AGATTCATCA TCCGCTACAA CAGCGGAAGA 
    TGACGAAACA GAGGAGATCC AACGGCTGAG CAATGCTCCG GTTCTCGCGA 
    TCCGATCCGT TCCATGAGTA ATCCCACCGG AGAAGAGAAG TGTCGTCGTC 
    GCCTTCCTGA TTCTCAACGC CATTAGCTGC TTCTGTATGA TTGATTTGAT 
    TGTTCCGTTA TCTTCGGCTT CGTCTTCATC TGGGGATTAT AAAAGGAGAA 
    GAAGCGTGTG CGGAGAATCT TTAACGCATA AGAGAG

AT2G41250.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G14310.1); Has 5345 Blast hits to 5345 proteins in 1611 species: Archae - 258; Bacteria - 4323; Metazoa - 249; Fungi - 67; Plants - 142; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).
Link
InterPro Scan - TAIR