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52-0683-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84802 [Map]; Strand: w
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: -108; Region: promoter
    Flanking Genome Sequence: 52-0683-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG TCCGACAGTG AATTTTGGTT AATAAATAAT 
    TTCACGTCCG GAATTGATTA AAAAAAAAAA AAAAAAAATN GCCCCGNNGG 
    GGNANGTTTT TTTTTNGNCN TNAANTTNTT TTTTNNNNAT TAAAAANNNA 
    NTTTTTTNNC NNNAANTNNC TTTNNNGGGN CCCCCCNAAA NTTTCCNGGG 
    NNGGGGNNGG GNCCNGNNCN AAAAAAAANG GGCCNNNGGG GNAANNNANN 
    NNCCCGNNGG NNGNCCCNTT TTNNCCTTTN GNCCCNTTTT NNNCCCCCCN 
    GGCCNTTTTT TTTTNNNNGG GTTCCCCNNC CAAAAAAAAA AAAANCCNTT 
    NGGGNTTTAA AAANNTGGGG GGNAAAAAAA AAANTTTNCC CNTTNNNAAT 
    TGGGNNCCCG GCCCNNNAAA AANNNNCCNC CCNGGGNCGN AACCCCNNGG 
    GGNNNTTTAA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1784987 [Map]; Strand: w
      • AT4G03827.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -457; Region: promoter
    Flanking Genome Sequence: 52-0683-1 - 3-prime edge 
    GAAAATGGTA ATGTTATGTC GCAATAAATT ACTAGAGAGC TATGTGCTTG 
    TTAACGTGTT ATGTCACACT ACAAAATCAT GTAGCAAATA GACAAACTAT 
    ACATGAAAAC AAAGAAAAAA GCAAGTAGTG GAGAAGAATC AACGAAGCGA 
    TTAATGAACT AAGCAGAGGA ATCAAGGAAG CAAATAAAAA CAAACAATGC 
    ACTTAACAGA AAAATTAAAG AAGCACAAAA GCAAGAAAAG CACNTTAACA 
    GAGGAACCAA AGAAGCAAAG AAACCAACAA TGCACAAAGC AGAGGAATCA 
    AATGAGCAAA CAAACAAACA ATGAATTTAG TAATAGAAGC AAAGAAGAAA 
    CAAGTAAACA TGTTAAACAT GTAAGAAAGA AACAACAAAC AAAGTCAAGA 
    ATCAAAGAAG TAGCATATAT ACATGAATGC GGATGCCTTT GCATGAATGT 
    CTATGTTTAT TGTATGCATC TAAATATTAA TGTATCCATG TAATTTATGC 
    ATGTAATGTA ATGTATGACT GTATATATGT ATGTATGTAC ATGCATGCAT 
    TGTGTTCGAA GATCCAAGAT GTTGACCGTG ATCACGCTAT TAAGGAATT

AT4G00200.1

Model type
Protein coding
Short Description
AT hook motif DNA-binding family protein
Computational Description
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03827.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR