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52-0685-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7981699 [Map]; Strand: w
      • AT5G23670.1 - [+] show detail - long chain base2
        Distance: 0; Region: exon1 (5UTR)
      • AT5G23670.2 - [+] show detail - long chain base2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0685-1 - 3-prime edge 
    GTTGAGAGAC AGAGACAGAG ACAGAGACAG AGATTTGAAT TGGAGGAATC 
    TTTTCCCCTC CGTGAGATTG AGAAGGGATC GGATCATAAA ACCATTTCTT 
    TTCTTTTTTA ATATTAAAAT ATTTAATAGT ACAGATAATT TATCTTTAGA 
    ACCTTAAAAC GAAATAGCGA TTTTACGTAT CTTGGGCCTT GGAGTCCACT 
    AATTCAAACT AGGCCCAAAT GTGATAGCTG ATGACCTGTT TGTTTAGAAC 
    TTTAAAATTT AGTTTGGAGA AAGAAAAAAA TGAGGTTCTA CCGGGAGTCG 
    AACCCAGGTC GCAGGATTCA AAGTCCTGAG TGCTAACCAC TACACCATAG 
    A

AT5G23670.1

Model type
Protein coding
Short Description
long chain base2
Curator Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description
long chain base2 (LCB2); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: photomorphogenesis, sphingosine biosynthetic process, sphingolipid biosynthetic process, pollen development; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23670.2

Model type
Protein coding
Short Description
long chain base2
Curator Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description
long chain base2 (LCB2); CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 10446 Blast hits to 10416 proteins in 2172 species: Archae - 77; Bacteria - 7037; Metazoa - 738; Fungi - 589; Plants - 234; Viruses - 9; Other Eukaryotes - 1762 (source: NCBI BLink).
Link
InterPro Scan - TAIR